Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M007157
Gene count gene family
5
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32307.81%0%0
Sorghum bicolor34,60906.88%0%0
Setaria italica35,55307.06%0%0
Oryza sativa ssp. japonica40,73808.1%0%0
Oryza sativa ssp. indica49,20209.78%0%0
Brachypodium distachyon26,63205.29%0%0
Hordeum vulgare24,31814.83%20%4.14
Musa acuminata36,63817.28%20%2.75
Arabidopsis thaliana27,41615.45%20%3.67
Carica papaya28,02705.57%0%0
Populus trichocarpa41,43418.23%20%2.43
Vitis vinifera26,50405.27%0%0
Solanum lycopersicum34,81316.92%20%2.89
Physcomitrella patens32,40006.44%0%0
Ostreococcus lucimarinus7,80501.55%0%0
Chlamydomonas reinhardtii17,81903.54%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932014.69%0%0
Panicoideae3109,485021.76%0%0
Oryza289,940017.87%0%0
Pooideae250,950110.12%20%1.98
BEP_Clade4140,890128%20%0.71
Poaceae7250,375149.75%20%0.4
Monocots8287,013257.03%40%0.7
Brassicales255,443111.02%20%1.81
Rosids1396,877219.25%40%2.08
Rosids4123,381224.52%40%1.63
Dicots5158,194331.44%60%1.91
Angiosperms13445,207588.47%100%1.13
Embryophyta14477,607594.91%100%1.05
Chlorophyta225,62405.09%0%0
Viridiplantae16503,2315100%100%1