Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M006708
Gene count gene family
6
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32307.81%0%0
Sorghum bicolor34,60906.88%0%0
Setaria italica35,55317.06%16.67%2.36
Oryza sativa ssp. japonica40,73818.1%16.67%2.06
Oryza sativa ssp. indica49,20219.78%16.67%1.7
Brachypodium distachyon26,63215.29%16.67%3.15
Hordeum vulgare24,31804.83%0%0
Musa acuminata36,63807.28%0%0
Arabidopsis thaliana27,41605.45%0%0
Carica papaya28,02705.57%0%0
Populus trichocarpa41,43408.23%0%0
Vitis vinifera26,50405.27%0%0
Solanum lycopersicum34,81316.92%16.67%2.41
Physcomitrella patens32,40006.44%0%0
Ostreococcus lucimarinus7,80511.55%16.67%10.75
Chlamydomonas reinhardtii17,81903.54%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932014.69%0%0
Panicoideae3109,485121.76%16.67%0.77
Oryza289,940217.87%33.33%1.87
Pooideae250,950110.12%16.67%1.65
BEP_Clade4140,890328%50%1.79
Poaceae7250,375449.75%66.67%1.34
Monocots8287,013457.03%66.67%1.17
Brassicales255,443011.02%0%0
Rosids1396,877019.25%0%0
Rosids4123,381024.52%0%0
Dicots5158,194131.44%16.67%0.53
Angiosperms13445,207588.47%83.33%0.94
Embryophyta14477,607594.91%83.33%0.88
Chlorophyta225,62415.09%16.67%3.28
Viridiplantae16503,2316100%100%1