Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M006518
Gene count gene family
6
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32317.81%16.67%2.13
Sorghum bicolor34,60906.88%0%0
Setaria italica35,55307.06%0%0
Oryza sativa ssp. japonica40,73818.1%16.67%2.06
Oryza sativa ssp. indica49,20209.78%0%0
Brachypodium distachyon26,63215.29%16.67%3.15
Hordeum vulgare24,31804.83%0%0
Musa acuminata36,63807.28%0%0
Arabidopsis thaliana27,41615.45%16.67%3.06
Carica papaya28,02705.57%0%0
Populus trichocarpa41,43408.23%0%0
Vitis vinifera26,50405.27%0%0
Solanum lycopersicum34,81316.92%16.67%2.41
Physcomitrella patens32,40016.44%16.67%2.59
Ostreococcus lucimarinus7,80501.55%0%0
Chlamydomonas reinhardtii17,81903.54%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932114.69%16.67%1.13
Panicoideae3109,485121.76%16.67%0.77
Oryza289,940117.87%16.67%0.93
Pooideae250,950110.12%16.67%1.65
BEP_Clade4140,890228%33.33%1.19
Poaceae7250,375349.75%50%1.01
Monocots8287,013357.03%50%0.88
Brassicales255,443111.02%16.67%1.51
Rosids1396,877119.25%16.67%0.87
Rosids4123,381124.52%16.67%0.68
Dicots5158,194231.44%33.33%1.06
Angiosperms13445,207588.47%83.33%0.94
Embryophyta14477,607694.91%100%1.05
Chlorophyta225,62405.09%0%0
Viridiplantae16503,2316100%100%1