Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M006274
Gene count gene family
6
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32307.81%0%0
Sorghum bicolor34,60906.88%0%0
Setaria italica35,55317.06%16.67%2.36
Oryza sativa ssp. japonica40,73818.1%16.67%2.06
Oryza sativa ssp. indica49,20209.78%0%0
Brachypodium distachyon26,63205.29%0%0
Hordeum vulgare24,31804.83%0%0
Musa acuminata36,63807.28%0%0
Arabidopsis thaliana27,41615.45%16.67%3.06
Carica papaya28,02705.57%0%0
Populus trichocarpa41,43408.23%0%0
Vitis vinifera26,50405.27%0%0
Solanum lycopersicum34,81316.92%16.67%2.41
Physcomitrella patens32,40006.44%0%0
Ostreococcus lucimarinus7,80511.55%16.67%10.75
Chlamydomonas reinhardtii17,81913.54%16.67%4.71

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932014.69%0%0
Panicoideae3109,485121.76%16.67%0.77
Oryza289,940117.87%16.67%0.93
Pooideae250,950010.12%0%0
BEP_Clade4140,890128%16.67%0.6
Poaceae7250,375249.75%33.33%0.67
Monocots8287,013257.03%33.33%0.58
Brassicales255,443111.02%16.67%1.51
Rosids1396,877119.25%16.67%0.87
Rosids4123,381124.52%16.67%0.68
Dicots5158,194231.44%33.33%1.06
Angiosperms13445,207488.47%66.67%0.75
Embryophyta14477,607494.91%66.67%0.7
Chlorophyta225,62425.09%33.33%6.55
Viridiplantae16503,2316100%100%1