Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M006205
Gene count gene family
6
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32317.81%16.67%2.13
Sorghum bicolor34,60916.88%16.67%2.42
Setaria italica35,55307.06%0%0
Oryza sativa ssp. japonica40,73818.1%16.67%2.06
Oryza sativa ssp. indica49,20209.78%0%0
Brachypodium distachyon26,63205.29%0%0
Hordeum vulgare24,31804.83%0%0
Musa acuminata36,63807.28%0%0
Arabidopsis thaliana27,41615.45%16.67%3.06
Carica papaya28,02705.57%0%0
Populus trichocarpa41,43408.23%0%0
Vitis vinifera26,50415.27%16.67%3.16
Solanum lycopersicum34,81306.92%0%0
Physcomitrella patens32,40006.44%0%0
Ostreococcus lucimarinus7,80511.55%16.67%10.75
Chlamydomonas reinhardtii17,81903.54%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932214.69%33.33%2.27
Panicoideae3109,485221.76%33.33%1.53
Oryza289,940117.87%16.67%0.93
Pooideae250,950010.12%0%0
BEP_Clade4140,890128%16.67%0.6
Poaceae7250,375349.75%50%1.01
Monocots8287,013357.03%50%0.88
Brassicales255,443111.02%16.67%1.51
Rosids1396,877119.25%16.67%0.87
Rosids4123,381224.52%33.33%1.36
Dicots5158,194231.44%33.33%1.06
Angiosperms13445,207588.47%83.33%0.94
Embryophyta14477,607594.91%83.33%0.88
Chlorophyta225,62415.09%16.67%3.28
Viridiplantae16503,2316100%100%1