Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M006184
Gene count gene family
6
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32317.81%16.67%2.13
Sorghum bicolor34,60906.88%0%0
Setaria italica35,55317.06%16.67%2.36
Oryza sativa ssp. japonica40,73808.1%0%0
Oryza sativa ssp. indica49,20219.78%16.67%1.7
Brachypodium distachyon26,63215.29%16.67%3.15
Hordeum vulgare24,31804.83%0%0
Musa acuminata36,63807.28%0%0
Arabidopsis thaliana27,41615.45%16.67%3.06
Carica papaya28,02705.57%0%0
Populus trichocarpa41,43408.23%0%0
Vitis vinifera26,50415.27%16.67%3.16
Solanum lycopersicum34,81306.92%0%0
Physcomitrella patens32,40006.44%0%0
Ostreococcus lucimarinus7,80501.55%0%0
Chlamydomonas reinhardtii17,81903.54%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932114.69%16.67%1.13
Panicoideae3109,485221.76%33.33%1.53
Oryza289,940117.87%16.67%0.93
Pooideae250,950110.12%16.67%1.65
BEP_Clade4140,890228%33.33%1.19
Poaceae7250,375449.75%66.67%1.34
Monocots8287,013457.03%66.67%1.17
Brassicales255,443111.02%16.67%1.51
Rosids1396,877119.25%16.67%0.87
Rosids4123,381224.52%33.33%1.36
Dicots5158,194231.44%33.33%1.06
Angiosperms13445,207688.47%100%1.13
Embryophyta14477,607694.91%100%1.05
Chlorophyta225,62405.09%0%0
Viridiplantae16503,2316100%100%1