Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M005629
Gene count gene family
6
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32307.81%0%0
Sorghum bicolor34,60916.88%16.67%2.42
Setaria italica35,55307.06%0%0
Oryza sativa ssp. japonica40,73818.1%16.67%2.06
Oryza sativa ssp. indica49,20209.78%0%0
Brachypodium distachyon26,63205.29%0%0
Hordeum vulgare24,31804.83%0%0
Musa acuminata36,63827.28%33.33%4.58
Arabidopsis thaliana27,41615.45%16.67%3.06
Carica papaya28,02715.57%16.67%2.99
Populus trichocarpa41,43408.23%0%0
Vitis vinifera26,50405.27%0%0
Solanum lycopersicum34,81306.92%0%0
Physcomitrella patens32,40006.44%0%0
Ostreococcus lucimarinus7,80501.55%0%0
Chlamydomonas reinhardtii17,81903.54%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932114.69%16.67%1.13
Panicoideae3109,485121.76%16.67%0.77
Oryza289,940117.87%16.67%0.93
Pooideae250,950010.12%0%0
BEP_Clade4140,890128%16.67%0.6
Poaceae7250,375249.75%33.33%0.67
Monocots8287,013457.03%66.67%1.17
Brassicales255,443211.02%33.33%3.02
Rosids1396,877219.25%33.33%1.73
Rosids4123,381224.52%33.33%1.36
Dicots5158,194231.44%33.33%1.06
Angiosperms13445,207688.47%100%1.13
Embryophyta14477,607694.91%100%1.05
Chlorophyta225,62405.09%0%0
Viridiplantae16503,2316100%100%1