Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M005410
Gene count gene family
6
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32307.81%0%0
Sorghum bicolor34,60906.88%0%0
Setaria italica35,55317.06%16.67%2.36
Oryza sativa ssp. japonica40,73808.1%0%0
Oryza sativa ssp. indica49,20219.78%16.67%1.7
Brachypodium distachyon26,63215.29%16.67%3.15
Hordeum vulgare24,31814.83%16.67%3.45
Musa acuminata36,63817.28%16.67%2.29
Arabidopsis thaliana27,41605.45%0%0
Carica papaya28,02705.57%0%0
Populus trichocarpa41,43408.23%0%0
Vitis vinifera26,50405.27%0%0
Solanum lycopersicum34,81306.92%0%0
Physcomitrella patens32,40016.44%16.67%2.59
Ostreococcus lucimarinus7,80501.55%0%0
Chlamydomonas reinhardtii17,81903.54%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932014.69%0%0
Panicoideae3109,485121.76%16.67%0.77
Oryza289,940117.87%16.67%0.93
Pooideae250,950210.12%33.33%3.29
BEP_Clade4140,890328%50%1.79
Poaceae7250,375449.75%66.67%1.34
Monocots8287,013557.03%83.33%1.46
Brassicales255,443011.02%0%0
Rosids1396,877019.25%0%0
Rosids4123,381024.52%0%0
Dicots5158,194031.44%0%0
Angiosperms13445,207588.47%83.33%0.94
Embryophyta14477,607694.91%100%1.05
Chlorophyta225,62405.09%0%0
Viridiplantae16503,2316100%100%1