Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M004728
Gene count gene family
7
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32317.81%14.29%1.83
Sorghum bicolor34,60916.88%14.29%2.08
Setaria italica35,55317.06%14.29%2.02
Oryza sativa ssp. japonica40,73818.1%14.29%1.76
Oryza sativa ssp. indica49,20219.78%14.29%1.46
Brachypodium distachyon26,63205.29%0%0
Hordeum vulgare24,31804.83%0%0
Musa acuminata36,63817.28%14.29%1.96
Arabidopsis thaliana27,41615.45%14.29%2.62
Carica papaya28,02705.57%0%0
Populus trichocarpa41,43408.23%0%0
Vitis vinifera26,50405.27%0%0
Solanum lycopersicum34,81306.92%0%0
Physcomitrella patens32,40006.44%0%0
Ostreococcus lucimarinus7,80501.55%0%0
Chlamydomonas reinhardtii17,81903.54%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932214.69%28.57%1.94
Panicoideae3109,485321.76%42.86%1.97
Oryza289,940217.87%28.57%1.6
Pooideae250,950010.12%0%0
BEP_Clade4140,890228%28.57%1.02
Poaceae7250,375549.75%71.43%1.44
Monocots8287,013657.03%85.71%1.5
Brassicales255,443111.02%14.29%1.3
Rosids1396,877119.25%14.29%0.74
Rosids4123,381124.52%14.29%0.58
Dicots5158,194131.44%14.29%0.45
Angiosperms13445,207788.47%100%1.13
Embryophyta14477,607794.91%100%1.05
Chlorophyta225,62405.09%0%0
Viridiplantae16503,2317100%100%1