Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M004040
Gene count gene family
7
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32307.81%0%0
Sorghum bicolor34,60906.88%0%0
Setaria italica35,55307.06%0%0
Oryza sativa ssp. japonica40,73808.1%0%0
Oryza sativa ssp. indica49,20209.78%0%0
Brachypodium distachyon26,63205.29%0%0
Hordeum vulgare24,31814.83%14.29%2.96
Musa acuminata36,63827.28%28.57%3.92
Arabidopsis thaliana27,41615.45%14.29%2.62
Carica papaya28,02705.57%0%0
Populus trichocarpa41,43408.23%0%0
Vitis vinifera26,50415.27%14.29%2.71
Solanum lycopersicum34,81316.92%14.29%2.07
Physcomitrella patens32,40016.44%14.29%2.22
Ostreococcus lucimarinus7,80501.55%0%0
Chlamydomonas reinhardtii17,81903.54%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932014.69%0%0
Panicoideae3109,485021.76%0%0
Oryza289,940017.87%0%0
Pooideae250,950110.12%14.29%1.41
BEP_Clade4140,890128%14.29%0.51
Poaceae7250,375149.75%14.29%0.29
Monocots8287,013357.03%42.86%0.75
Brassicales255,443111.02%14.29%1.3
Rosids1396,877119.25%14.29%0.74
Rosids4123,381224.52%28.57%1.17
Dicots5158,194331.44%42.86%1.36
Angiosperms13445,207688.47%85.71%0.97
Embryophyta14477,607794.91%100%1.05
Chlorophyta225,62405.09%0%0
Viridiplantae16503,2317100%100%1