Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M003564
Gene count gene family
8
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32307.81%0%0
Sorghum bicolor34,60906.88%0%0
Setaria italica35,55317.06%12.5%1.77
Oryza sativa ssp. japonica40,73818.1%12.5%1.54
Oryza sativa ssp. indica49,20219.78%12.5%1.28
Brachypodium distachyon26,63215.29%12.5%2.36
Hordeum vulgare24,31814.83%12.5%2.59
Musa acuminata36,63817.28%12.5%1.72
Arabidopsis thaliana27,41615.45%12.5%2.29
Carica papaya28,02705.57%0%0
Populus trichocarpa41,43408.23%0%0
Vitis vinifera26,50415.27%12.5%2.37
Solanum lycopersicum34,81306.92%0%0
Physcomitrella patens32,40006.44%0%0
Ostreococcus lucimarinus7,80501.55%0%0
Chlamydomonas reinhardtii17,81903.54%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932014.69%0%0
Panicoideae3109,485121.76%12.5%0.57
Oryza289,940217.87%25%1.4
Pooideae250,950210.12%25%2.47
BEP_Clade4140,890428%50%1.79
Poaceae7250,375549.75%62.5%1.26
Monocots8287,013657.03%75%1.32
Brassicales255,443111.02%12.5%1.13
Rosids1396,877119.25%12.5%0.65
Rosids4123,381224.52%25%1.02
Dicots5158,194231.44%25%0.8
Angiosperms13445,207888.47%100%1.13
Embryophyta14477,607894.91%100%1.05
Chlorophyta225,62405.09%0%0
Viridiplantae16503,2318100%100%1