Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M003315
Gene count gene family
8
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32307.81%0%0
Sorghum bicolor34,60916.88%12.5%1.82
Setaria italica35,55307.06%0%0
Oryza sativa ssp. japonica40,73808.1%0%0
Oryza sativa ssp. indica49,20209.78%0%0
Brachypodium distachyon26,63205.29%0%0
Hordeum vulgare24,31804.83%0%0
Musa acuminata36,63817.28%12.5%1.72
Arabidopsis thaliana27,41615.45%12.5%2.29
Carica papaya28,02715.57%12.5%2.24
Populus trichocarpa41,43418.23%12.5%1.52
Vitis vinifera26,50405.27%0%0
Solanum lycopersicum34,81306.92%0%0
Physcomitrella patens32,40016.44%12.5%1.94
Ostreococcus lucimarinus7,80511.55%12.5%8.06
Chlamydomonas reinhardtii17,81913.54%12.5%3.53

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932114.69%12.5%0.85
Panicoideae3109,485121.76%12.5%0.57
Oryza289,940017.87%0%0
Pooideae250,950010.12%0%0
BEP_Clade4140,890028%0%0
Poaceae7250,375149.75%12.5%0.25
Monocots8287,013257.03%25%0.44
Brassicales255,443211.02%25%2.27
Rosids1396,877319.25%37.5%1.95
Rosids4123,381324.52%37.5%1.53
Dicots5158,194331.44%37.5%1.19
Angiosperms13445,207588.47%62.5%0.71
Embryophyta14477,607694.91%75%0.79
Chlorophyta225,62425.09%25%4.91
Viridiplantae16503,2318100%100%1