Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M003100
Gene count gene family
8
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32317.81%12.5%1.6
Sorghum bicolor34,60906.88%0%0
Setaria italica35,55317.06%12.5%1.77
Oryza sativa ssp. japonica40,73818.1%12.5%1.54
Oryza sativa ssp. indica49,20209.78%0%0
Brachypodium distachyon26,63205.29%0%0
Hordeum vulgare24,31814.83%12.5%2.59
Musa acuminata36,63807.28%0%0
Arabidopsis thaliana27,41605.45%0%0
Carica papaya28,02715.57%12.5%2.24
Populus trichocarpa41,43408.23%0%0
Vitis vinifera26,50415.27%12.5%2.37
Solanum lycopersicum34,81306.92%0%0
Physcomitrella patens32,40016.44%12.5%1.94
Ostreococcus lucimarinus7,80501.55%0%0
Chlamydomonas reinhardtii17,81913.54%12.5%3.53

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932114.69%12.5%0.85
Panicoideae3109,485221.76%25%1.15
Oryza289,940117.87%12.5%0.7
Pooideae250,950110.12%12.5%1.24
BEP_Clade4140,890228%25%0.89
Poaceae7250,375449.75%50%1.01
Monocots8287,013457.03%50%0.88
Brassicales255,443111.02%12.5%1.13
Rosids1396,877119.25%12.5%0.65
Rosids4123,381224.52%25%1.02
Dicots5158,194231.44%25%0.8
Angiosperms13445,207688.47%75%0.85
Embryophyta14477,607794.91%87.5%0.92
Chlorophyta225,62415.09%12.5%2.46
Viridiplantae16503,2318100%100%1