Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M003008
Gene count gene family
8
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32327.81%25%3.2
Sorghum bicolor34,60916.88%12.5%1.82
Setaria italica35,55317.06%12.5%1.77
Oryza sativa ssp. japonica40,73818.1%12.5%1.54
Oryza sativa ssp. indica49,20219.78%12.5%1.28
Brachypodium distachyon26,63205.29%0%0
Hordeum vulgare24,31804.83%0%0
Musa acuminata36,63807.28%0%0
Arabidopsis thaliana27,41605.45%0%0
Carica papaya28,02705.57%0%0
Populus trichocarpa41,43408.23%0%0
Vitis vinifera26,50405.27%0%0
Solanum lycopersicum34,81306.92%0%0
Physcomitrella patens32,40026.44%25%3.88
Ostreococcus lucimarinus7,80501.55%0%0
Chlamydomonas reinhardtii17,81903.54%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932314.69%37.5%2.55
Panicoideae3109,485421.76%50%2.3
Oryza289,940217.87%25%1.4
Pooideae250,950010.12%0%0
BEP_Clade4140,890228%25%0.89
Poaceae7250,375649.75%75%1.51
Monocots8287,013657.03%75%1.32
Brassicales255,443011.02%0%0
Rosids1396,877019.25%0%0
Rosids4123,381024.52%0%0
Dicots5158,194031.44%0%0
Angiosperms13445,207688.47%75%0.85
Embryophyta14477,607894.91%100%1.05
Chlorophyta225,62405.09%0%0
Viridiplantae16503,2318100%100%1