Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M002550
Gene count gene family
9
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32317.81%11.11%1.42
Sorghum bicolor34,60906.88%0%0
Setaria italica35,55317.06%11.11%1.57
Oryza sativa ssp. japonica40,73818.1%11.11%1.37
Oryza sativa ssp. indica49,20209.78%0%0
Brachypodium distachyon26,63215.29%11.11%2.1
Hordeum vulgare24,31814.83%11.11%2.3
Musa acuminata36,63817.28%11.11%1.53
Arabidopsis thaliana27,41605.45%0%0
Carica papaya28,02705.57%0%0
Populus trichocarpa41,43408.23%0%0
Vitis vinifera26,50415.27%11.11%2.11
Solanum lycopersicum34,81316.92%11.11%1.61
Physcomitrella patens32,40016.44%11.11%1.73
Ostreococcus lucimarinus7,80501.55%0%0
Chlamydomonas reinhardtii17,81903.54%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932114.69%11.11%0.76
Panicoideae3109,485221.76%22.22%1.02
Oryza289,940117.87%11.11%0.62
Pooideae250,950210.12%22.22%2.2
BEP_Clade4140,890328%33.33%1.19
Poaceae7250,375549.75%55.56%1.12
Monocots8287,013657.03%66.67%1.17
Brassicales255,443011.02%0%0
Rosids1396,877019.25%0%0
Rosids4123,381124.52%11.11%0.45
Dicots5158,194231.44%22.22%0.71
Angiosperms13445,207888.47%88.89%1
Embryophyta14477,607994.91%100%1.05
Chlorophyta225,62405.09%0%0
Viridiplantae16503,2319100%100%1