Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M002526
Gene count gene family
9
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32317.81%11.11%1.42
Sorghum bicolor34,60916.88%11.11%1.61
Setaria italica35,55317.06%11.11%1.57
Oryza sativa ssp. japonica40,73808.1%0%0
Oryza sativa ssp. indica49,20209.78%0%0
Brachypodium distachyon26,63205.29%0%0
Hordeum vulgare24,31804.83%0%0
Musa acuminata36,63817.28%11.11%1.53
Arabidopsis thaliana27,41615.45%11.11%2.04
Carica papaya28,02705.57%0%0
Populus trichocarpa41,43408.23%0%0
Vitis vinifera26,50415.27%11.11%2.11
Solanum lycopersicum34,81306.92%0%0
Physcomitrella patens32,40016.44%11.11%1.73
Ostreococcus lucimarinus7,80511.55%11.11%7.17
Chlamydomonas reinhardtii17,81913.54%11.11%3.14

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932214.69%22.22%1.51
Panicoideae3109,485321.76%33.33%1.53
Oryza289,940017.87%0%0
Pooideae250,950010.12%0%0
BEP_Clade4140,890028%0%0
Poaceae7250,375349.75%33.33%0.67
Monocots8287,013457.03%44.44%0.78
Brassicales255,443111.02%11.11%1.01
Rosids1396,877119.25%11.11%0.58
Rosids4123,381224.52%22.22%0.91
Dicots5158,194231.44%22.22%0.71
Angiosperms13445,207688.47%66.67%0.75
Embryophyta14477,607794.91%77.78%0.82
Chlorophyta225,62425.09%22.22%4.37
Viridiplantae16503,2319100%100%1