Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M002139
Gene count gene family
9
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32307.81%0%0
Sorghum bicolor34,60906.88%0%0
Setaria italica35,55317.06%11.11%1.57
Oryza sativa ssp. japonica40,73818.1%11.11%1.37
Oryza sativa ssp. indica49,20209.78%0%0
Brachypodium distachyon26,63215.29%11.11%2.1
Hordeum vulgare24,31804.83%0%0
Musa acuminata36,63807.28%0%0
Arabidopsis thaliana27,41615.45%11.11%2.04
Carica papaya28,02705.57%0%0
Populus trichocarpa41,43418.23%11.11%1.35
Vitis vinifera26,50415.27%11.11%2.11
Solanum lycopersicum34,81316.92%11.11%1.61
Physcomitrella patens32,40026.44%22.22%3.45
Ostreococcus lucimarinus7,80501.55%0%0
Chlamydomonas reinhardtii17,81903.54%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932014.69%0%0
Panicoideae3109,485121.76%11.11%0.51
Oryza289,940117.87%11.11%0.62
Pooideae250,950110.12%11.11%1.1
BEP_Clade4140,890228%22.22%0.79
Poaceae7250,375349.75%33.33%0.67
Monocots8287,013357.03%33.33%0.58
Brassicales255,443111.02%11.11%1.01
Rosids1396,877219.25%22.22%1.15
Rosids4123,381324.52%33.33%1.36
Dicots5158,194431.44%44.44%1.41
Angiosperms13445,207788.47%77.78%0.88
Embryophyta14477,607994.91%100%1.05
Chlorophyta225,62405.09%0%0
Viridiplantae16503,2319100%100%1