Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M001923
Gene count gene family
9
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32327.81%22.22%2.85
Sorghum bicolor34,60906.88%0%0
Setaria italica35,55317.06%11.11%1.57
Oryza sativa ssp. japonica40,73818.1%11.11%1.37
Oryza sativa ssp. indica49,20229.78%22.22%2.27
Brachypodium distachyon26,63205.29%0%0
Hordeum vulgare24,31814.83%11.11%2.3
Musa acuminata36,63807.28%0%0
Arabidopsis thaliana27,41605.45%0%0
Carica papaya28,02715.57%11.11%1.99
Populus trichocarpa41,43408.23%0%0
Vitis vinifera26,50415.27%11.11%2.11
Solanum lycopersicum34,81306.92%0%0
Physcomitrella patens32,40006.44%0%0
Ostreococcus lucimarinus7,80501.55%0%0
Chlamydomonas reinhardtii17,81903.54%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932214.69%22.22%1.51
Panicoideae3109,485321.76%33.33%1.53
Oryza289,940317.87%33.33%1.87
Pooideae250,950110.12%11.11%1.1
BEP_Clade4140,890428%44.44%1.59
Poaceae7250,375749.75%77.78%1.56
Monocots8287,013757.03%77.78%1.36
Brassicales255,443111.02%11.11%1.01
Rosids1396,877119.25%11.11%0.58
Rosids4123,381224.52%22.22%0.91
Dicots5158,194231.44%22.22%0.71
Angiosperms13445,207988.47%100%1.13
Embryophyta14477,607994.91%100%1.05
Chlorophyta225,62405.09%0%0
Viridiplantae16503,2319100%100%1