Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M001915
Gene count gene family
9
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32317.81%11.11%1.42
Sorghum bicolor34,60906.88%0%0
Setaria italica35,55307.06%0%0
Oryza sativa ssp. japonica40,73808.1%0%0
Oryza sativa ssp. indica49,20219.78%11.11%1.14
Brachypodium distachyon26,63205.29%0%0
Hordeum vulgare24,31804.83%0%0
Musa acuminata36,63817.28%11.11%1.53
Arabidopsis thaliana27,41605.45%0%0
Carica papaya28,02725.57%22.22%3.99
Populus trichocarpa41,43418.23%11.11%1.35
Vitis vinifera26,50405.27%0%0
Solanum lycopersicum34,81316.92%11.11%1.61
Physcomitrella patens32,40016.44%11.11%1.73
Ostreococcus lucimarinus7,80501.55%0%0
Chlamydomonas reinhardtii17,81913.54%11.11%3.14

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932114.69%11.11%0.76
Panicoideae3109,485121.76%11.11%0.51
Oryza289,940117.87%11.11%0.62
Pooideae250,950010.12%0%0
BEP_Clade4140,890128%11.11%0.4
Poaceae7250,375249.75%22.22%0.45
Monocots8287,013357.03%33.33%0.58
Brassicales255,443211.02%22.22%2.02
Rosids1396,877319.25%33.33%1.73
Rosids4123,381324.52%33.33%1.36
Dicots5158,194431.44%44.44%1.41
Angiosperms13445,207788.47%77.78%0.88
Embryophyta14477,607894.91%88.89%0.94
Chlorophyta225,62415.09%11.11%2.18
Viridiplantae16503,2319100%100%1