Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03M001856
Gene count gene family
9
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32307.81%0%0
Sorghum bicolor34,60906.88%0%0
Setaria italica35,55307.06%0%0
Oryza sativa ssp. japonica40,73808.1%0%0
Oryza sativa ssp. indica49,20219.78%11.11%1.14
Brachypodium distachyon26,63205.29%0%0
Hordeum vulgare24,31804.83%0%0
Musa acuminata36,63807.28%0%0
Arabidopsis thaliana27,41615.45%11.11%2.04
Carica papaya28,02705.57%0%0
Populus trichocarpa41,43418.23%11.11%1.35
Vitis vinifera26,50455.27%55.56%10.54
Solanum lycopersicum34,81306.92%0%0
Physcomitrella patens32,40006.44%0%0
Ostreococcus lucimarinus7,80511.55%11.11%7.17
Chlamydomonas reinhardtii17,81903.54%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932014.69%0%0
Panicoideae3109,485021.76%0%0
Oryza289,940117.87%11.11%0.62
Pooideae250,950010.12%0%0
BEP_Clade4140,890128%11.11%0.4
Poaceae7250,375149.75%11.11%0.22
Monocots8287,013157.03%11.11%0.19
Brassicales255,443111.02%11.11%1.01
Rosids1396,877219.25%22.22%1.15
Rosids4123,381724.52%77.78%3.17
Dicots5158,194731.44%77.78%2.47
Angiosperms13445,207888.47%88.89%1
Embryophyta14477,607894.91%88.89%0.94
Chlorophyta225,62415.09%11.11%2.18
Viridiplantae16503,2319100%100%1