Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- ORTHO03M000003
- Gene count gene family
- 139
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 14 | 7.81% | 10.07% | 1.29 |
Sorghum bicolor | 34,609 | 15 | 6.88% | 10.79% | 1.57 |
Setaria italica | 35,553 | 15 | 7.06% | 10.79% | 1.53 |
Oryza sativa ssp. japonica | 40,738 | 21 | 8.1% | 15.11% | 1.87 |
Oryza sativa ssp. indica | 49,202 | 18 | 9.78% | 12.95% | 1.32 |
Brachypodium distachyon | 26,632 | 11 | 5.29% | 7.91% | 1.5 |
Hordeum vulgare | 24,318 | 16 | 4.83% | 11.51% | 2.38 |
Musa acuminata | 36,638 | 0 | 7.28% | 0% | 0 |
Arabidopsis thaliana | 27,416 | 18 | 5.45% | 12.95% | 2.38 |
Carica papaya | 28,027 | 2 | 5.57% | 1.44% | 0.26 |
Populus trichocarpa | 41,434 | 7 | 8.23% | 5.04% | 0.61 |
Vitis vinifera | 26,504 | 0 | 5.27% | 0% | 0 |
Solanum lycopersicum | 34,813 | 2 | 6.92% | 1.44% | 0.21 |
Physcomitrella patens | 32,400 | 0 | 6.44% | 0% | 0 |
Ostreococcus lucimarinus | 7,805 | 0 | 1.55% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 0 | 3.54% | 0% | 0 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 29 | 14.69% | 20.86% | 1.42 |
Panicoideae | 3 | 109,485 | 44 | 21.76% | 31.65% | 1.45 |
Oryza | 2 | 89,940 | 39 | 17.87% | 28.06% | 1.57 |
Pooideae | 2 | 50,950 | 27 | 10.12% | 19.42% | 1.92 |
BEP_Clade | 4 | 140,890 | 66 | 28% | 47.48% | 1.7 |
Poaceae | 7 | 250,375 | 110 | 49.75% | 79.14% | 1.59 |
Monocots | 8 | 287,013 | 110 | 57.03% | 79.14% | 1.39 |
Brassicales | 2 | 55,443 | 20 | 11.02% | 14.39% | 1.31 |
Rosids1 | 3 | 96,877 | 27 | 19.25% | 19.42% | 1.01 |
Rosids | 4 | 123,381 | 27 | 24.52% | 19.42% | 0.79 |
Dicots | 5 | 158,194 | 29 | 31.44% | 20.86% | 0.66 |
Angiosperms | 13 | 445,207 | 139 | 88.47% | 100% | 1.13 |
Embryophyta | 14 | 477,607 | 139 | 94.91% | 100% | 1.05 |
Chlorophyta | 2 | 25,624 | 0 | 5.09% | 0% | 0 |
Viridiplantae | 16 | 503,231 | 139 | 100% | 100% | 1 |