Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
HOM03M008952
Gene count gene family
7
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32317.81%14.29%1.83
Sorghum bicolor34,60906.88%0%0
Setaria italica35,55317.06%14.29%2.02
Oryza sativa ssp. japonica40,73808.1%0%0
Oryza sativa ssp. indica49,20209.78%0%0
Brachypodium distachyon26,63225.29%28.57%5.4
Hordeum vulgare24,31814.83%14.29%2.96
Musa acuminata36,63817.28%14.29%1.96
Arabidopsis thaliana27,41605.45%0%0
Carica papaya28,02705.57%0%0
Populus trichocarpa41,43408.23%0%0
Vitis vinifera26,50405.27%0%0
Solanum lycopersicum34,81306.92%0%0
Physcomitrella patens32,40016.44%14.29%2.22
Ostreococcus lucimarinus7,80501.55%0%0
Chlamydomonas reinhardtii17,81903.54%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932114.69%14.29%0.97
Panicoideae3109,485221.76%28.57%1.31
Oryza289,940017.87%0%0
Pooideae250,950310.12%42.86%4.24
BEP_Clade4140,890328%42.86%1.53
Poaceae7250,375549.75%71.43%1.44
Monocots8287,013657.03%85.71%1.5
Brassicales255,443011.02%0%0
Rosids1396,877019.25%0%0
Rosids4123,381024.52%0%0
Dicots5158,194031.44%0%0
Angiosperms13445,207688.47%85.71%0.97
Embryophyta14477,607794.91%100%1.05
Chlorophyta225,62405.09%0%0
Viridiplantae16503,2317100%100%1