Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
HOM03M008189
Gene count gene family
9
Total coding gene count
503,231
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Zea mays39,32327.81%22.22%2.85
Sorghum bicolor34,60916.88%11.11%1.61
Setaria italica35,55307.06%0%0
Oryza sativa ssp. japonica40,73818.1%11.11%1.37
Oryza sativa ssp. indica49,20239.78%33.33%3.41
Brachypodium distachyon26,63215.29%11.11%2.1
Hordeum vulgare24,31814.83%11.11%2.3
Musa acuminata36,63807.28%0%0
Arabidopsis thaliana27,41605.45%0%0
Carica papaya28,02705.57%0%0
Populus trichocarpa41,43408.23%0%0
Vitis vinifera26,50405.27%0%0
Solanum lycopersicum34,81306.92%0%0
Physcomitrella patens32,40006.44%0%0
Ostreococcus lucimarinus7,80501.55%0%0
Chlamydomonas reinhardtii17,81903.54%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Andropogoneae273,932314.69%33.33%2.27
Panicoideae3109,485321.76%33.33%1.53
Oryza289,940417.87%44.44%2.49
Pooideae250,950210.12%22.22%2.2
BEP_Clade4140,890628%66.67%2.38
Poaceae7250,375949.75%100%2.01
Monocots8287,013957.03%100%1.75
Brassicales255,443011.02%0%0
Rosids1396,877019.25%0%0
Rosids4123,381024.52%0%0
Dicots5158,194031.44%0%0
Angiosperms13445,207988.47%100%1.13
Embryophyta14477,607994.91%100%1.05
Chlorophyta225,62405.09%0%0
Viridiplantae16503,2319100%100%1