Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M001327
- Gene count gene family
- 56
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 4 | 7.81% | 7.14% | 0.91 |
Sorghum bicolor | 34,609 | 5 | 6.88% | 8.93% | 1.3 |
Setaria italica | 35,553 | 3 | 7.06% | 5.36% | 0.76 |
Oryza sativa ssp. japonica | 40,738 | 3 | 8.1% | 5.36% | 0.66 |
Oryza sativa ssp. indica | 49,202 | 6 | 9.78% | 10.71% | 1.1 |
Brachypodium distachyon | 26,632 | 5 | 5.29% | 8.93% | 1.69 |
Hordeum vulgare | 24,318 | 3 | 4.83% | 5.36% | 1.11 |
Musa acuminata | 36,638 | 3 | 7.28% | 5.36% | 0.74 |
Arabidopsis thaliana | 27,416 | 5 | 5.45% | 8.93% | 1.64 |
Carica papaya | 28,027 | 2 | 5.57% | 3.57% | 0.64 |
Populus trichocarpa | 41,434 | 3 | 8.23% | 5.36% | 0.65 |
Vitis vinifera | 26,504 | 3 | 5.27% | 5.36% | 1.02 |
Solanum lycopersicum | 34,813 | 8 | 6.92% | 14.29% | 2.07 |
Physcomitrella patens | 32,400 | 2 | 6.44% | 3.57% | 0.55 |
Ostreococcus lucimarinus | 7,805 | 0 | 1.55% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 1 | 3.54% | 1.79% | 0.51 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 9 | 14.69% | 16.07% | 1.09 |
Panicoideae | 3 | 109,485 | 12 | 21.76% | 21.43% | 0.98 |
Oryza | 2 | 89,940 | 9 | 17.87% | 16.07% | 0.9 |
Pooideae | 2 | 50,950 | 8 | 10.12% | 14.29% | 1.41 |
BEP_Clade | 4 | 140,890 | 17 | 28% | 30.36% | 1.08 |
Poaceae | 7 | 250,375 | 29 | 49.75% | 51.79% | 1.04 |
Monocots | 8 | 287,013 | 32 | 57.03% | 57.14% | 1 |
Brassicales | 2 | 55,443 | 7 | 11.02% | 12.5% | 1.13 |
Rosids1 | 3 | 96,877 | 10 | 19.25% | 17.86% | 0.93 |
Rosids | 4 | 123,381 | 13 | 24.52% | 23.21% | 0.95 |
Dicots | 5 | 158,194 | 21 | 31.44% | 37.5% | 1.19 |
Angiosperms | 13 | 445,207 | 53 | 88.47% | 94.64% | 1.07 |
Embryophyta | 14 | 477,607 | 55 | 94.91% | 98.21% | 1.03 |
Chlorophyta | 2 | 25,624 | 1 | 5.09% | 1.79% | 0.35 |
Viridiplantae | 16 | 503,231 | 56 | 100% | 100% | 1 |