Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M001299
- Gene count gene family
- 58
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 2 | 7.81% | 3.45% | 0.44 |
Sorghum bicolor | 34,609 | 7 | 6.88% | 12.07% | 1.75 |
Setaria italica | 35,553 | 3 | 7.06% | 5.17% | 0.73 |
Oryza sativa ssp. japonica | 40,738 | 3 | 8.1% | 5.17% | 0.64 |
Oryza sativa ssp. indica | 49,202 | 4 | 9.78% | 6.9% | 0.71 |
Brachypodium distachyon | 26,632 | 2 | 5.29% | 3.45% | 0.65 |
Hordeum vulgare | 24,318 | 5 | 4.83% | 8.62% | 1.78 |
Musa acuminata | 36,638 | 2 | 7.28% | 3.45% | 0.47 |
Arabidopsis thaliana | 27,416 | 3 | 5.45% | 5.17% | 0.95 |
Carica papaya | 28,027 | 6 | 5.57% | 10.34% | 1.86 |
Populus trichocarpa | 41,434 | 4 | 8.23% | 6.9% | 0.84 |
Vitis vinifera | 26,504 | 7 | 5.27% | 12.07% | 2.29 |
Solanum lycopersicum | 34,813 | 2 | 6.92% | 3.45% | 0.5 |
Physcomitrella patens | 32,400 | 3 | 6.44% | 5.17% | 0.8 |
Ostreococcus lucimarinus | 7,805 | 2 | 1.55% | 3.45% | 2.23 |
Chlamydomonas reinhardtii | 17,819 | 3 | 3.54% | 5.17% | 1.46 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 9 | 14.69% | 15.52% | 1.06 |
Panicoideae | 3 | 109,485 | 12 | 21.76% | 20.69% | 0.95 |
Oryza | 2 | 89,940 | 7 | 17.87% | 12.07% | 0.68 |
Pooideae | 2 | 50,950 | 7 | 10.12% | 12.07% | 1.19 |
BEP_Clade | 4 | 140,890 | 14 | 28% | 24.14% | 0.86 |
Poaceae | 7 | 250,375 | 26 | 49.75% | 44.83% | 0.9 |
Monocots | 8 | 287,013 | 28 | 57.03% | 48.28% | 0.85 |
Brassicales | 2 | 55,443 | 9 | 11.02% | 15.52% | 1.41 |
Rosids1 | 3 | 96,877 | 13 | 19.25% | 22.41% | 1.16 |
Rosids | 4 | 123,381 | 20 | 24.52% | 34.48% | 1.41 |
Dicots | 5 | 158,194 | 22 | 31.44% | 37.93% | 1.21 |
Angiosperms | 13 | 445,207 | 50 | 88.47% | 86.21% | 0.97 |
Embryophyta | 14 | 477,607 | 53 | 94.91% | 91.38% | 0.96 |
Chlorophyta | 2 | 25,624 | 5 | 5.09% | 8.62% | 1.69 |
Viridiplantae | 16 | 503,231 | 58 | 100% | 100% | 1 |