Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M001186
- Gene count gene family
- 62
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 3 | 7.81% | 4.84% | 0.62 |
Sorghum bicolor | 34,609 | 3 | 6.88% | 4.84% | 0.7 |
Setaria italica | 35,553 | 4 | 7.06% | 6.45% | 0.91 |
Oryza sativa ssp. japonica | 40,738 | 5 | 8.1% | 8.06% | 1 |
Oryza sativa ssp. indica | 49,202 | 9 | 9.78% | 14.52% | 1.48 |
Brachypodium distachyon | 26,632 | 2 | 5.29% | 3.23% | 0.61 |
Hordeum vulgare | 24,318 | 2 | 4.83% | 3.23% | 0.67 |
Musa acuminata | 36,638 | 5 | 7.28% | 8.06% | 1.11 |
Arabidopsis thaliana | 27,416 | 5 | 5.45% | 8.06% | 1.48 |
Carica papaya | 28,027 | 4 | 5.57% | 6.45% | 1.16 |
Populus trichocarpa | 41,434 | 6 | 8.23% | 9.68% | 1.18 |
Vitis vinifera | 26,504 | 9 | 5.27% | 14.52% | 2.76 |
Solanum lycopersicum | 34,813 | 3 | 6.92% | 4.84% | 0.7 |
Physcomitrella patens | 32,400 | 2 | 6.44% | 3.23% | 0.5 |
Ostreococcus lucimarinus | 7,805 | 0 | 1.55% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 0 | 3.54% | 0% | 0 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 6 | 14.69% | 9.68% | 0.66 |
Panicoideae | 3 | 109,485 | 10 | 21.76% | 16.13% | 0.74 |
Oryza | 2 | 89,940 | 14 | 17.87% | 22.58% | 1.26 |
Pooideae | 2 | 50,950 | 4 | 10.12% | 6.45% | 0.64 |
BEP_Clade | 4 | 140,890 | 18 | 28% | 29.03% | 1.04 |
Poaceae | 7 | 250,375 | 28 | 49.75% | 45.16% | 0.91 |
Monocots | 8 | 287,013 | 33 | 57.03% | 53.23% | 0.93 |
Brassicales | 2 | 55,443 | 9 | 11.02% | 14.52% | 1.32 |
Rosids1 | 3 | 96,877 | 15 | 19.25% | 24.19% | 1.26 |
Rosids | 4 | 123,381 | 24 | 24.52% | 38.71% | 1.58 |
Dicots | 5 | 158,194 | 27 | 31.44% | 43.55% | 1.39 |
Angiosperms | 13 | 445,207 | 60 | 88.47% | 96.77% | 1.09 |
Embryophyta | 14 | 477,607 | 62 | 94.91% | 100% | 1.05 |
Chlorophyta | 2 | 25,624 | 0 | 5.09% | 0% | 0 |
Viridiplantae | 16 | 503,231 | 62 | 100% | 100% | 1 |