Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M001117
- Gene count gene family
- 65
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 6 | 7.81% | 9.23% | 1.18 |
Sorghum bicolor | 34,609 | 3 | 6.88% | 4.62% | 0.67 |
Setaria italica | 35,553 | 5 | 7.06% | 7.69% | 1.09 |
Oryza sativa ssp. japonica | 40,738 | 5 | 8.1% | 7.69% | 0.95 |
Oryza sativa ssp. indica | 49,202 | 6 | 9.78% | 9.23% | 0.94 |
Brachypodium distachyon | 26,632 | 4 | 5.29% | 6.15% | 1.16 |
Hordeum vulgare | 24,318 | 4 | 4.83% | 6.15% | 1.27 |
Musa acuminata | 36,638 | 3 | 7.28% | 4.62% | 0.63 |
Arabidopsis thaliana | 27,416 | 6 | 5.45% | 9.23% | 1.69 |
Carica papaya | 28,027 | 3 | 5.57% | 4.62% | 0.83 |
Populus trichocarpa | 41,434 | 10 | 8.23% | 15.38% | 1.87 |
Vitis vinifera | 26,504 | 4 | 5.27% | 6.15% | 1.17 |
Solanum lycopersicum | 34,813 | 5 | 6.92% | 7.69% | 1.11 |
Physcomitrella patens | 32,400 | 1 | 6.44% | 1.54% | 0.24 |
Ostreococcus lucimarinus | 7,805 | 0 | 1.55% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 0 | 3.54% | 0% | 0 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 9 | 14.69% | 13.85% | 0.94 |
Panicoideae | 3 | 109,485 | 14 | 21.76% | 21.54% | 0.99 |
Oryza | 2 | 89,940 | 11 | 17.87% | 16.92% | 0.95 |
Pooideae | 2 | 50,950 | 8 | 10.12% | 12.31% | 1.22 |
BEP_Clade | 4 | 140,890 | 19 | 28% | 29.23% | 1.04 |
Poaceae | 7 | 250,375 | 33 | 49.75% | 50.77% | 1.02 |
Monocots | 8 | 287,013 | 36 | 57.03% | 55.38% | 0.97 |
Brassicales | 2 | 55,443 | 9 | 11.02% | 13.85% | 1.26 |
Rosids1 | 3 | 96,877 | 19 | 19.25% | 29.23% | 1.52 |
Rosids | 4 | 123,381 | 23 | 24.52% | 35.38% | 1.44 |
Dicots | 5 | 158,194 | 28 | 31.44% | 43.08% | 1.37 |
Angiosperms | 13 | 445,207 | 64 | 88.47% | 98.46% | 1.11 |
Embryophyta | 14 | 477,607 | 65 | 94.91% | 100% | 1.05 |
Chlorophyta | 2 | 25,624 | 0 | 5.09% | 0% | 0 |
Viridiplantae | 16 | 503,231 | 65 | 100% | 100% | 1 |