Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M000828
- Gene count gene family
- 83
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 13 | 7.81% | 15.66% | 2.01 |
Sorghum bicolor | 34,609 | 1 | 6.88% | 1.2% | 0.17 |
Setaria italica | 35,553 | 5 | 7.06% | 6.02% | 0.85 |
Oryza sativa ssp. japonica | 40,738 | 6 | 8.1% | 7.23% | 0.89 |
Oryza sativa ssp. indica | 49,202 | 7 | 9.78% | 8.43% | 0.86 |
Brachypodium distachyon | 26,632 | 6 | 5.29% | 7.23% | 1.37 |
Hordeum vulgare | 24,318 | 2 | 4.83% | 2.41% | 0.5 |
Musa acuminata | 36,638 | 8 | 7.28% | 9.64% | 1.32 |
Arabidopsis thaliana | 27,416 | 5 | 5.45% | 6.02% | 1.1 |
Carica papaya | 28,027 | 5 | 5.57% | 6.02% | 1.08 |
Populus trichocarpa | 41,434 | 7 | 8.23% | 8.43% | 1.02 |
Vitis vinifera | 26,504 | 7 | 5.27% | 8.43% | 1.6 |
Solanum lycopersicum | 34,813 | 6 | 6.92% | 7.23% | 1.04 |
Physcomitrella patens | 32,400 | 3 | 6.44% | 3.61% | 0.56 |
Ostreococcus lucimarinus | 7,805 | 1 | 1.55% | 1.2% | 0.77 |
Chlamydomonas reinhardtii | 17,819 | 1 | 3.54% | 1.2% | 0.34 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 14 | 14.69% | 16.87% | 1.15 |
Panicoideae | 3 | 109,485 | 19 | 21.76% | 22.89% | 1.05 |
Oryza | 2 | 89,940 | 13 | 17.87% | 15.66% | 0.88 |
Pooideae | 2 | 50,950 | 8 | 10.12% | 9.64% | 0.95 |
BEP_Clade | 4 | 140,890 | 21 | 28% | 25.3% | 0.9 |
Poaceae | 7 | 250,375 | 40 | 49.75% | 48.19% | 0.97 |
Monocots | 8 | 287,013 | 48 | 57.03% | 57.83% | 1.01 |
Brassicales | 2 | 55,443 | 10 | 11.02% | 12.05% | 1.09 |
Rosids1 | 3 | 96,877 | 17 | 19.25% | 20.48% | 1.06 |
Rosids | 4 | 123,381 | 24 | 24.52% | 28.92% | 1.18 |
Dicots | 5 | 158,194 | 30 | 31.44% | 36.14% | 1.15 |
Angiosperms | 13 | 445,207 | 78 | 88.47% | 93.98% | 1.06 |
Embryophyta | 14 | 477,607 | 81 | 94.91% | 97.59% | 1.03 |
Chlorophyta | 2 | 25,624 | 2 | 5.09% | 2.41% | 0.47 |
Viridiplantae | 16 | 503,231 | 83 | 100% | 100% | 1 |