Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M000791
- Gene count gene family
- 89
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 11 | 7.81% | 12.36% | 1.58 |
Sorghum bicolor | 34,609 | 4 | 6.88% | 4.49% | 0.65 |
Setaria italica | 35,553 | 4 | 7.06% | 4.49% | 0.64 |
Oryza sativa ssp. japonica | 40,738 | 4 | 8.1% | 4.49% | 0.55 |
Oryza sativa ssp. indica | 49,202 | 4 | 9.78% | 4.49% | 0.46 |
Brachypodium distachyon | 26,632 | 5 | 5.29% | 5.62% | 1.06 |
Hordeum vulgare | 24,318 | 5 | 4.83% | 5.62% | 1.16 |
Musa acuminata | 36,638 | 3 | 7.28% | 3.37% | 0.46 |
Arabidopsis thaliana | 27,416 | 11 | 5.45% | 12.36% | 2.27 |
Carica papaya | 28,027 | 5 | 5.57% | 5.62% | 1.01 |
Populus trichocarpa | 41,434 | 7 | 8.23% | 7.87% | 0.96 |
Vitis vinifera | 26,504 | 6 | 5.27% | 6.74% | 1.28 |
Solanum lycopersicum | 34,813 | 5 | 6.92% | 5.62% | 0.81 |
Physcomitrella patens | 32,400 | 7 | 6.44% | 7.87% | 1.22 |
Ostreococcus lucimarinus | 7,805 | 1 | 1.55% | 1.12% | 0.72 |
Chlamydomonas reinhardtii | 17,819 | 7 | 3.54% | 7.87% | 2.22 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 15 | 14.69% | 16.85% | 1.15 |
Panicoideae | 3 | 109,485 | 19 | 21.76% | 21.35% | 0.98 |
Oryza | 2 | 89,940 | 8 | 17.87% | 8.99% | 0.5 |
Pooideae | 2 | 50,950 | 10 | 10.12% | 11.24% | 1.11 |
BEP_Clade | 4 | 140,890 | 18 | 28% | 20.22% | 0.72 |
Poaceae | 7 | 250,375 | 37 | 49.75% | 41.57% | 0.84 |
Monocots | 8 | 287,013 | 40 | 57.03% | 44.94% | 0.79 |
Brassicales | 2 | 55,443 | 16 | 11.02% | 17.98% | 1.63 |
Rosids1 | 3 | 96,877 | 23 | 19.25% | 25.84% | 1.34 |
Rosids | 4 | 123,381 | 29 | 24.52% | 32.58% | 1.33 |
Dicots | 5 | 158,194 | 34 | 31.44% | 38.2% | 1.22 |
Angiosperms | 13 | 445,207 | 74 | 88.47% | 83.15% | 0.94 |
Embryophyta | 14 | 477,607 | 81 | 94.91% | 91.01% | 0.96 |
Chlorophyta | 2 | 25,624 | 8 | 5.09% | 8.99% | 1.77 |
Viridiplantae | 16 | 503,231 | 89 | 100% | 100% | 1 |