Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M000577
- Gene count gene family
- 116
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 12 | 7.81% | 10.34% | 1.32 |
Sorghum bicolor | 34,609 | 2 | 6.88% | 1.72% | 0.25 |
Setaria italica | 35,553 | 15 | 7.06% | 12.93% | 1.83 |
Oryza sativa ssp. japonica | 40,738 | 5 | 8.1% | 4.31% | 0.53 |
Oryza sativa ssp. indica | 49,202 | 7 | 9.78% | 6.03% | 0.62 |
Brachypodium distachyon | 26,632 | 5 | 5.29% | 4.31% | 0.81 |
Hordeum vulgare | 24,318 | 9 | 4.83% | 7.76% | 1.61 |
Musa acuminata | 36,638 | 22 | 7.28% | 18.97% | 2.61 |
Arabidopsis thaliana | 27,416 | 20 | 5.45% | 17.24% | 3.16 |
Carica papaya | 28,027 | 2 | 5.57% | 1.72% | 0.31 |
Populus trichocarpa | 41,434 | 13 | 8.23% | 11.21% | 1.36 |
Vitis vinifera | 26,504 | 1 | 5.27% | 0.86% | 0.16 |
Solanum lycopersicum | 34,813 | 3 | 6.92% | 2.59% | 0.37 |
Physcomitrella patens | 32,400 | 0 | 6.44% | 0% | 0 |
Ostreococcus lucimarinus | 7,805 | 0 | 1.55% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 0 | 3.54% | 0% | 0 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 14 | 14.69% | 12.07% | 0.82 |
Panicoideae | 3 | 109,485 | 29 | 21.76% | 25% | 1.15 |
Oryza | 2 | 89,940 | 12 | 17.87% | 10.34% | 0.58 |
Pooideae | 2 | 50,950 | 14 | 10.12% | 12.07% | 1.19 |
BEP_Clade | 4 | 140,890 | 26 | 28% | 22.41% | 0.8 |
Poaceae | 7 | 250,375 | 55 | 49.75% | 47.41% | 0.95 |
Monocots | 8 | 287,013 | 77 | 57.03% | 66.38% | 1.16 |
Brassicales | 2 | 55,443 | 22 | 11.02% | 18.97% | 1.72 |
Rosids1 | 3 | 96,877 | 35 | 19.25% | 30.17% | 1.57 |
Rosids | 4 | 123,381 | 36 | 24.52% | 31.03% | 1.27 |
Dicots | 5 | 158,194 | 39 | 31.44% | 33.62% | 1.07 |
Angiosperms | 13 | 445,207 | 116 | 88.47% | 100% | 1.13 |
Embryophyta | 14 | 477,607 | 116 | 94.91% | 100% | 1.05 |
Chlorophyta | 2 | 25,624 | 0 | 5.09% | 0% | 0 |
Viridiplantae | 16 | 503,231 | 116 | 100% | 100% | 1 |