Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M000453
- Gene count gene family
- 139
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 11 | 7.81% | 7.91% | 1.01 |
Sorghum bicolor | 34,609 | 6 | 6.88% | 4.32% | 0.63 |
Setaria italica | 35,553 | 7 | 7.06% | 5.04% | 0.71 |
Oryza sativa ssp. japonica | 40,738 | 8 | 8.1% | 5.76% | 0.71 |
Oryza sativa ssp. indica | 49,202 | 9 | 9.78% | 6.47% | 0.66 |
Brachypodium distachyon | 26,632 | 8 | 5.29% | 5.76% | 1.09 |
Hordeum vulgare | 24,318 | 8 | 4.83% | 5.76% | 1.19 |
Musa acuminata | 36,638 | 12 | 7.28% | 8.63% | 1.19 |
Arabidopsis thaliana | 27,416 | 9 | 5.45% | 6.47% | 1.19 |
Carica papaya | 28,027 | 4 | 5.57% | 2.88% | 0.52 |
Populus trichocarpa | 41,434 | 36 | 8.23% | 25.9% | 3.15 |
Vitis vinifera | 26,504 | 5 | 5.27% | 3.6% | 0.68 |
Solanum lycopersicum | 34,813 | 6 | 6.92% | 4.32% | 0.62 |
Physcomitrella patens | 32,400 | 8 | 6.44% | 5.76% | 0.89 |
Ostreococcus lucimarinus | 7,805 | 1 | 1.55% | 0.72% | 0.46 |
Chlamydomonas reinhardtii | 17,819 | 1 | 3.54% | 0.72% | 0.2 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 17 | 14.69% | 12.23% | 0.83 |
Panicoideae | 3 | 109,485 | 24 | 21.76% | 17.27% | 0.79 |
Oryza | 2 | 89,940 | 17 | 17.87% | 12.23% | 0.68 |
Pooideae | 2 | 50,950 | 16 | 10.12% | 11.51% | 1.14 |
BEP_Clade | 4 | 140,890 | 33 | 28% | 23.74% | 0.85 |
Poaceae | 7 | 250,375 | 57 | 49.75% | 41.01% | 0.82 |
Monocots | 8 | 287,013 | 69 | 57.03% | 49.64% | 0.87 |
Brassicales | 2 | 55,443 | 13 | 11.02% | 9.35% | 0.85 |
Rosids1 | 3 | 96,877 | 49 | 19.25% | 35.25% | 1.83 |
Rosids | 4 | 123,381 | 54 | 24.52% | 38.85% | 1.58 |
Dicots | 5 | 158,194 | 60 | 31.44% | 43.17% | 1.37 |
Angiosperms | 13 | 445,207 | 129 | 88.47% | 92.81% | 1.05 |
Embryophyta | 14 | 477,607 | 137 | 94.91% | 98.56% | 1.04 |
Chlorophyta | 2 | 25,624 | 2 | 5.09% | 1.44% | 0.28 |
Viridiplantae | 16 | 503,231 | 139 | 100% | 100% | 1 |