Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M000306
- Gene count gene family
- 182
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 9 | 7.81% | 4.95% | 0.63 |
Sorghum bicolor | 34,609 | 12 | 6.88% | 6.59% | 0.96 |
Setaria italica | 35,553 | 9 | 7.06% | 4.95% | 0.7 |
Oryza sativa ssp. japonica | 40,738 | 12 | 8.1% | 6.59% | 0.81 |
Oryza sativa ssp. indica | 49,202 | 12 | 9.78% | 6.59% | 0.67 |
Brachypodium distachyon | 26,632 | 9 | 5.29% | 4.95% | 0.94 |
Hordeum vulgare | 24,318 | 8 | 4.83% | 4.4% | 0.91 |
Musa acuminata | 36,638 | 22 | 7.28% | 12.09% | 1.66 |
Arabidopsis thaliana | 27,416 | 13 | 5.45% | 7.14% | 1.31 |
Carica papaya | 28,027 | 9 | 5.57% | 4.95% | 0.89 |
Populus trichocarpa | 41,434 | 13 | 8.23% | 7.14% | 0.87 |
Vitis vinifera | 26,504 | 9 | 5.27% | 4.95% | 0.94 |
Solanum lycopersicum | 34,813 | 11 | 6.92% | 6.04% | 0.87 |
Physcomitrella patens | 32,400 | 6 | 6.44% | 3.3% | 0.51 |
Ostreococcus lucimarinus | 7,805 | 9 | 1.55% | 4.95% | 3.19 |
Chlamydomonas reinhardtii | 17,819 | 19 | 3.54% | 10.44% | 2.95 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 21 | 14.69% | 11.54% | 0.79 |
Panicoideae | 3 | 109,485 | 30 | 21.76% | 16.48% | 0.76 |
Oryza | 2 | 89,940 | 24 | 17.87% | 13.19% | 0.74 |
Pooideae | 2 | 50,950 | 17 | 10.12% | 9.34% | 0.92 |
BEP_Clade | 4 | 140,890 | 41 | 28% | 22.53% | 0.8 |
Poaceae | 7 | 250,375 | 71 | 49.75% | 39.01% | 0.78 |
Monocots | 8 | 287,013 | 93 | 57.03% | 51.1% | 0.9 |
Brassicales | 2 | 55,443 | 22 | 11.02% | 12.09% | 1.1 |
Rosids1 | 3 | 96,877 | 35 | 19.25% | 19.23% | 1 |
Rosids | 4 | 123,381 | 44 | 24.52% | 24.18% | 0.99 |
Dicots | 5 | 158,194 | 55 | 31.44% | 30.22% | 0.96 |
Angiosperms | 13 | 445,207 | 148 | 88.47% | 81.32% | 0.92 |
Embryophyta | 14 | 477,607 | 154 | 94.91% | 84.62% | 0.89 |
Chlorophyta | 2 | 25,624 | 28 | 5.09% | 15.38% | 3.02 |
Viridiplantae | 16 | 503,231 | 182 | 100% | 100% | 1 |