Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M000298
- Gene count gene family
- 184
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 17 | 7.81% | 9.24% | 1.18 |
Sorghum bicolor | 34,609 | 14 | 6.88% | 7.61% | 1.11 |
Setaria italica | 35,553 | 12 | 7.06% | 6.52% | 0.92 |
Oryza sativa ssp. japonica | 40,738 | 11 | 8.1% | 5.98% | 0.74 |
Oryza sativa ssp. indica | 49,202 | 17 | 9.78% | 9.24% | 0.94 |
Brachypodium distachyon | 26,632 | 11 | 5.29% | 5.98% | 1.13 |
Hordeum vulgare | 24,318 | 5 | 4.83% | 2.72% | 0.56 |
Musa acuminata | 36,638 | 19 | 7.28% | 10.33% | 1.42 |
Arabidopsis thaliana | 27,416 | 12 | 5.45% | 6.52% | 1.2 |
Carica papaya | 28,027 | 9 | 5.57% | 4.89% | 0.88 |
Populus trichocarpa | 41,434 | 17 | 8.23% | 9.24% | 1.12 |
Vitis vinifera | 26,504 | 14 | 5.27% | 7.61% | 1.44 |
Solanum lycopersicum | 34,813 | 11 | 6.92% | 5.98% | 0.86 |
Physcomitrella patens | 32,400 | 10 | 6.44% | 5.43% | 0.84 |
Ostreococcus lucimarinus | 7,805 | 2 | 1.55% | 1.09% | 0.7 |
Chlamydomonas reinhardtii | 17,819 | 3 | 3.54% | 1.63% | 0.46 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 31 | 14.69% | 16.85% | 1.15 |
Panicoideae | 3 | 109,485 | 43 | 21.76% | 23.37% | 1.07 |
Oryza | 2 | 89,940 | 28 | 17.87% | 15.22% | 0.85 |
Pooideae | 2 | 50,950 | 16 | 10.12% | 8.7% | 0.86 |
BEP_Clade | 4 | 140,890 | 44 | 28% | 23.91% | 0.85 |
Poaceae | 7 | 250,375 | 87 | 49.75% | 47.28% | 0.95 |
Monocots | 8 | 287,013 | 106 | 57.03% | 57.61% | 1.01 |
Brassicales | 2 | 55,443 | 21 | 11.02% | 11.41% | 1.04 |
Rosids1 | 3 | 96,877 | 38 | 19.25% | 20.65% | 1.07 |
Rosids | 4 | 123,381 | 52 | 24.52% | 28.26% | 1.15 |
Dicots | 5 | 158,194 | 63 | 31.44% | 34.24% | 1.09 |
Angiosperms | 13 | 445,207 | 169 | 88.47% | 91.85% | 1.04 |
Embryophyta | 14 | 477,607 | 179 | 94.91% | 97.28% | 1.02 |
Chlorophyta | 2 | 25,624 | 5 | 5.09% | 2.72% | 0.53 |
Viridiplantae | 16 | 503,231 | 184 | 100% | 100% | 1 |