Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M000286
- Gene count gene family
- 190
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 10 | 7.81% | 5.26% | 0.67 |
Sorghum bicolor | 34,609 | 9 | 6.88% | 4.74% | 0.69 |
Setaria italica | 35,553 | 12 | 7.06% | 6.32% | 0.9 |
Oryza sativa ssp. japonica | 40,738 | 10 | 8.1% | 5.26% | 0.65 |
Oryza sativa ssp. indica | 49,202 | 14 | 9.78% | 7.37% | 0.75 |
Brachypodium distachyon | 26,632 | 11 | 5.29% | 5.79% | 1.09 |
Hordeum vulgare | 24,318 | 8 | 4.83% | 4.21% | 0.87 |
Musa acuminata | 36,638 | 10 | 7.28% | 5.26% | 0.72 |
Arabidopsis thaliana | 27,416 | 10 | 5.45% | 5.26% | 0.97 |
Carica papaya | 28,027 | 14 | 5.57% | 7.37% | 1.32 |
Populus trichocarpa | 41,434 | 25 | 8.23% | 13.16% | 1.6 |
Vitis vinifera | 26,504 | 19 | 5.27% | 10% | 1.9 |
Solanum lycopersicum | 34,813 | 21 | 6.92% | 11.05% | 1.6 |
Physcomitrella patens | 32,400 | 10 | 6.44% | 5.26% | 0.82 |
Ostreococcus lucimarinus | 7,805 | 1 | 1.55% | 0.53% | 0.34 |
Chlamydomonas reinhardtii | 17,819 | 6 | 3.54% | 3.16% | 0.89 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 19 | 14.69% | 10% | 0.68 |
Panicoideae | 3 | 109,485 | 31 | 21.76% | 16.32% | 0.75 |
Oryza | 2 | 89,940 | 24 | 17.87% | 12.63% | 0.71 |
Pooideae | 2 | 50,950 | 19 | 10.12% | 10% | 0.99 |
BEP_Clade | 4 | 140,890 | 43 | 28% | 22.63% | 0.81 |
Poaceae | 7 | 250,375 | 74 | 49.75% | 38.95% | 0.78 |
Monocots | 8 | 287,013 | 84 | 57.03% | 44.21% | 0.78 |
Brassicales | 2 | 55,443 | 24 | 11.02% | 12.63% | 1.15 |
Rosids1 | 3 | 96,877 | 49 | 19.25% | 25.79% | 1.34 |
Rosids | 4 | 123,381 | 68 | 24.52% | 35.79% | 1.46 |
Dicots | 5 | 158,194 | 89 | 31.44% | 46.84% | 1.49 |
Angiosperms | 13 | 445,207 | 173 | 88.47% | 91.05% | 1.03 |
Embryophyta | 14 | 477,607 | 183 | 94.91% | 96.32% | 1.01 |
Chlorophyta | 2 | 25,624 | 7 | 5.09% | 3.68% | 0.72 |
Viridiplantae | 16 | 503,231 | 190 | 100% | 100% | 1 |