Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M000262
- Gene count gene family
- 205
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 18 | 7.81% | 8.78% | 1.12 |
Sorghum bicolor | 34,609 | 17 | 6.88% | 8.29% | 1.2 |
Setaria italica | 35,553 | 18 | 7.06% | 8.78% | 1.24 |
Oryza sativa ssp. japonica | 40,738 | 15 | 8.1% | 7.32% | 0.9 |
Oryza sativa ssp. indica | 49,202 | 18 | 9.78% | 8.78% | 0.9 |
Brachypodium distachyon | 26,632 | 16 | 5.29% | 7.8% | 1.47 |
Hordeum vulgare | 24,318 | 12 | 4.83% | 5.85% | 1.21 |
Musa acuminata | 36,638 | 28 | 7.28% | 13.66% | 1.88 |
Arabidopsis thaliana | 27,416 | 11 | 5.45% | 5.37% | 0.99 |
Carica papaya | 28,027 | 9 | 5.57% | 4.39% | 0.79 |
Populus trichocarpa | 41,434 | 12 | 8.23% | 5.85% | 0.71 |
Vitis vinifera | 26,504 | 10 | 5.27% | 4.88% | 0.93 |
Solanum lycopersicum | 34,813 | 13 | 6.92% | 6.34% | 0.92 |
Physcomitrella patens | 32,400 | 7 | 6.44% | 3.41% | 0.53 |
Ostreococcus lucimarinus | 7,805 | 0 | 1.55% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 1 | 3.54% | 0.49% | 0.14 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 35 | 14.69% | 17.07% | 1.16 |
Panicoideae | 3 | 109,485 | 53 | 21.76% | 25.85% | 1.19 |
Oryza | 2 | 89,940 | 33 | 17.87% | 16.1% | 0.9 |
Pooideae | 2 | 50,950 | 28 | 10.12% | 13.66% | 1.35 |
BEP_Clade | 4 | 140,890 | 61 | 28% | 29.76% | 1.06 |
Poaceae | 7 | 250,375 | 114 | 49.75% | 55.61% | 1.12 |
Monocots | 8 | 287,013 | 142 | 57.03% | 69.27% | 1.21 |
Brassicales | 2 | 55,443 | 20 | 11.02% | 9.76% | 0.89 |
Rosids1 | 3 | 96,877 | 32 | 19.25% | 15.61% | 0.81 |
Rosids | 4 | 123,381 | 42 | 24.52% | 20.49% | 0.84 |
Dicots | 5 | 158,194 | 55 | 31.44% | 26.83% | 0.85 |
Angiosperms | 13 | 445,207 | 197 | 88.47% | 96.1% | 1.09 |
Embryophyta | 14 | 477,607 | 204 | 94.91% | 99.51% | 1.05 |
Chlorophyta | 2 | 25,624 | 1 | 5.09% | 0.49% | 0.1 |
Viridiplantae | 16 | 503,231 | 205 | 100% | 100% | 1 |