Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M000194
- Gene count gene family
- 256
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 22 | 7.81% | 8.59% | 1.1 |
Sorghum bicolor | 34,609 | 21 | 6.88% | 8.2% | 1.19 |
Setaria italica | 35,553 | 19 | 7.06% | 7.42% | 1.05 |
Oryza sativa ssp. japonica | 40,738 | 21 | 8.1% | 8.2% | 1.01 |
Oryza sativa ssp. indica | 49,202 | 23 | 9.78% | 8.98% | 0.92 |
Brachypodium distachyon | 26,632 | 17 | 5.29% | 6.64% | 1.26 |
Hordeum vulgare | 24,318 | 21 | 4.83% | 8.2% | 1.7 |
Musa acuminata | 36,638 | 28 | 7.28% | 10.94% | 1.5 |
Arabidopsis thaliana | 27,416 | 16 | 5.45% | 6.25% | 1.15 |
Carica papaya | 28,027 | 17 | 5.57% | 6.64% | 1.19 |
Populus trichocarpa | 41,434 | 24 | 8.23% | 9.38% | 1.14 |
Vitis vinifera | 26,504 | 16 | 5.27% | 6.25% | 1.19 |
Solanum lycopersicum | 34,813 | 8 | 6.92% | 3.13% | 0.45 |
Physcomitrella patens | 32,400 | 3 | 6.44% | 1.17% | 0.18 |
Ostreococcus lucimarinus | 7,805 | 0 | 1.55% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 0 | 3.54% | 0% | 0 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 43 | 14.69% | 16.8% | 1.14 |
Panicoideae | 3 | 109,485 | 62 | 21.76% | 24.22% | 1.11 |
Oryza | 2 | 89,940 | 44 | 17.87% | 17.19% | 0.96 |
Pooideae | 2 | 50,950 | 38 | 10.12% | 14.84% | 1.47 |
BEP_Clade | 4 | 140,890 | 82 | 28% | 32.03% | 1.14 |
Poaceae | 7 | 250,375 | 144 | 49.75% | 56.25% | 1.13 |
Monocots | 8 | 287,013 | 172 | 57.03% | 67.19% | 1.18 |
Brassicales | 2 | 55,443 | 33 | 11.02% | 12.89% | 1.17 |
Rosids1 | 3 | 96,877 | 57 | 19.25% | 22.27% | 1.16 |
Rosids | 4 | 123,381 | 73 | 24.52% | 28.52% | 1.16 |
Dicots | 5 | 158,194 | 81 | 31.44% | 31.64% | 1.01 |
Angiosperms | 13 | 445,207 | 253 | 88.47% | 98.83% | 1.12 |
Embryophyta | 14 | 477,607 | 256 | 94.91% | 100% | 1.05 |
Chlorophyta | 2 | 25,624 | 0 | 5.09% | 0% | 0 |
Viridiplantae | 16 | 503,231 | 256 | 100% | 100% | 1 |