Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M000176
- Gene count gene family
- 277
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 18 | 7.81% | 6.5% | 0.83 |
Sorghum bicolor | 34,609 | 19 | 6.88% | 6.86% | 1 |
Setaria italica | 35,553 | 14 | 7.06% | 5.05% | 0.72 |
Oryza sativa ssp. japonica | 40,738 | 15 | 8.1% | 5.42% | 0.67 |
Oryza sativa ssp. indica | 49,202 | 21 | 9.78% | 7.58% | 0.78 |
Brachypodium distachyon | 26,632 | 15 | 5.29% | 5.42% | 1.02 |
Hordeum vulgare | 24,318 | 11 | 4.83% | 3.97% | 0.82 |
Musa acuminata | 36,638 | 28 | 7.28% | 10.11% | 1.39 |
Arabidopsis thaliana | 27,416 | 23 | 5.45% | 8.3% | 1.52 |
Carica papaya | 28,027 | 28 | 5.57% | 10.11% | 1.82 |
Populus trichocarpa | 41,434 | 24 | 8.23% | 8.66% | 1.05 |
Vitis vinifera | 26,504 | 32 | 5.27% | 11.55% | 2.19 |
Solanum lycopersicum | 34,813 | 22 | 6.92% | 7.94% | 1.15 |
Physcomitrella patens | 32,400 | 7 | 6.44% | 2.53% | 0.39 |
Ostreococcus lucimarinus | 7,805 | 0 | 1.55% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 0 | 3.54% | 0% | 0 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 37 | 14.69% | 13.36% | 0.91 |
Panicoideae | 3 | 109,485 | 51 | 21.76% | 18.41% | 0.85 |
Oryza | 2 | 89,940 | 36 | 17.87% | 13% | 0.73 |
Pooideae | 2 | 50,950 | 26 | 10.12% | 9.39% | 0.93 |
BEP_Clade | 4 | 140,890 | 62 | 28% | 22.38% | 0.8 |
Poaceae | 7 | 250,375 | 113 | 49.75% | 40.79% | 0.82 |
Monocots | 8 | 287,013 | 141 | 57.03% | 50.9% | 0.89 |
Brassicales | 2 | 55,443 | 51 | 11.02% | 18.41% | 1.67 |
Rosids1 | 3 | 96,877 | 75 | 19.25% | 27.08% | 1.41 |
Rosids | 4 | 123,381 | 107 | 24.52% | 38.63% | 1.58 |
Dicots | 5 | 158,194 | 129 | 31.44% | 46.57% | 1.48 |
Angiosperms | 13 | 445,207 | 270 | 88.47% | 97.47% | 1.1 |
Embryophyta | 14 | 477,607 | 277 | 94.91% | 100% | 1.05 |
Chlorophyta | 2 | 25,624 | 0 | 5.09% | 0% | 0 |
Viridiplantae | 16 | 503,231 | 277 | 100% | 100% | 1 |