Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M000135
- Gene count gene family
- 348
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 24 | 7.81% | 6.9% | 0.88 |
Sorghum bicolor | 34,609 | 33 | 6.88% | 9.48% | 1.38 |
Setaria italica | 35,553 | 29 | 7.06% | 8.33% | 1.18 |
Oryza sativa ssp. japonica | 40,738 | 34 | 8.1% | 9.77% | 1.21 |
Oryza sativa ssp. indica | 49,202 | 39 | 9.78% | 11.21% | 1.15 |
Brachypodium distachyon | 26,632 | 24 | 5.29% | 6.9% | 1.3 |
Hordeum vulgare | 24,318 | 16 | 4.83% | 4.6% | 0.95 |
Musa acuminata | 36,638 | 16 | 7.28% | 4.6% | 0.63 |
Arabidopsis thaliana | 27,416 | 27 | 5.45% | 7.76% | 1.42 |
Carica papaya | 28,027 | 11 | 5.57% | 3.16% | 0.57 |
Populus trichocarpa | 41,434 | 42 | 8.23% | 12.07% | 1.47 |
Vitis vinifera | 26,504 | 24 | 5.27% | 6.9% | 1.31 |
Solanum lycopersicum | 34,813 | 18 | 6.92% | 5.17% | 0.75 |
Physcomitrella patens | 32,400 | 8 | 6.44% | 2.3% | 0.36 |
Ostreococcus lucimarinus | 7,805 | 1 | 1.55% | 0.29% | 0.19 |
Chlamydomonas reinhardtii | 17,819 | 2 | 3.54% | 0.57% | 0.16 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 57 | 14.69% | 16.38% | 1.12 |
Panicoideae | 3 | 109,485 | 86 | 21.76% | 24.71% | 1.14 |
Oryza | 2 | 89,940 | 73 | 17.87% | 20.98% | 1.17 |
Pooideae | 2 | 50,950 | 40 | 10.12% | 11.49% | 1.14 |
BEP_Clade | 4 | 140,890 | 113 | 28% | 32.47% | 1.16 |
Poaceae | 7 | 250,375 | 199 | 49.75% | 57.18% | 1.15 |
Monocots | 8 | 287,013 | 215 | 57.03% | 61.78% | 1.08 |
Brassicales | 2 | 55,443 | 38 | 11.02% | 10.92% | 0.99 |
Rosids1 | 3 | 96,877 | 80 | 19.25% | 22.99% | 1.19 |
Rosids | 4 | 123,381 | 104 | 24.52% | 29.89% | 1.22 |
Dicots | 5 | 158,194 | 122 | 31.44% | 35.06% | 1.12 |
Angiosperms | 13 | 445,207 | 337 | 88.47% | 96.84% | 1.09 |
Embryophyta | 14 | 477,607 | 345 | 94.91% | 99.14% | 1.04 |
Chlorophyta | 2 | 25,624 | 3 | 5.09% | 0.86% | 0.17 |
Viridiplantae | 16 | 503,231 | 348 | 100% | 100% | 1 |