Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M000133
- Gene count gene family
- 353
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 21 | 7.81% | 5.95% | 0.76 |
Sorghum bicolor | 34,609 | 21 | 6.88% | 5.95% | 0.86 |
Setaria italica | 35,553 | 21 | 7.06% | 5.95% | 0.84 |
Oryza sativa ssp. japonica | 40,738 | 19 | 8.1% | 5.38% | 0.66 |
Oryza sativa ssp. indica | 49,202 | 22 | 9.78% | 6.23% | 0.64 |
Brachypodium distachyon | 26,632 | 23 | 5.29% | 6.52% | 1.23 |
Hordeum vulgare | 24,318 | 25 | 4.83% | 7.08% | 1.47 |
Musa acuminata | 36,638 | 35 | 7.28% | 9.92% | 1.36 |
Arabidopsis thaliana | 27,416 | 23 | 5.45% | 6.52% | 1.2 |
Carica papaya | 28,027 | 26 | 5.57% | 7.37% | 1.32 |
Populus trichocarpa | 41,434 | 27 | 8.23% | 7.65% | 0.93 |
Vitis vinifera | 26,504 | 16 | 5.27% | 4.53% | 0.86 |
Solanum lycopersicum | 34,813 | 21 | 6.92% | 5.95% | 0.86 |
Physcomitrella patens | 32,400 | 20 | 6.44% | 5.67% | 0.88 |
Ostreococcus lucimarinus | 7,805 | 15 | 1.55% | 4.25% | 2.74 |
Chlamydomonas reinhardtii | 17,819 | 18 | 3.54% | 5.1% | 1.44 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 42 | 14.69% | 11.9% | 0.81 |
Panicoideae | 3 | 109,485 | 63 | 21.76% | 17.85% | 0.82 |
Oryza | 2 | 89,940 | 41 | 17.87% | 11.61% | 0.65 |
Pooideae | 2 | 50,950 | 48 | 10.12% | 13.6% | 1.34 |
BEP_Clade | 4 | 140,890 | 89 | 28% | 25.21% | 0.9 |
Poaceae | 7 | 250,375 | 152 | 49.75% | 43.06% | 0.87 |
Monocots | 8 | 287,013 | 187 | 57.03% | 52.97% | 0.93 |
Brassicales | 2 | 55,443 | 49 | 11.02% | 13.88% | 1.26 |
Rosids1 | 3 | 96,877 | 76 | 19.25% | 21.53% | 1.12 |
Rosids | 4 | 123,381 | 92 | 24.52% | 26.06% | 1.06 |
Dicots | 5 | 158,194 | 113 | 31.44% | 32.01% | 1.02 |
Angiosperms | 13 | 445,207 | 300 | 88.47% | 84.99% | 0.96 |
Embryophyta | 14 | 477,607 | 320 | 94.91% | 90.65% | 0.96 |
Chlorophyta | 2 | 25,624 | 33 | 5.09% | 9.35% | 1.84 |
Viridiplantae | 16 | 503,231 | 353 | 100% | 100% | 1 |