Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M000042
- Gene count gene family
- 909
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 81 | 7.81% | 8.91% | 1.14 |
Sorghum bicolor | 34,609 | 55 | 6.88% | 6.05% | 0.88 |
Setaria italica | 35,553 | 58 | 7.06% | 6.38% | 0.9 |
Oryza sativa ssp. japonica | 40,738 | 55 | 8.1% | 6.05% | 0.75 |
Oryza sativa ssp. indica | 49,202 | 70 | 9.78% | 7.7% | 0.79 |
Brachypodium distachyon | 26,632 | 52 | 5.29% | 5.72% | 1.08 |
Hordeum vulgare | 24,318 | 33 | 4.83% | 3.63% | 0.75 |
Musa acuminata | 36,638 | 84 | 7.28% | 9.24% | 1.27 |
Arabidopsis thaliana | 27,416 | 61 | 5.45% | 6.71% | 1.23 |
Carica papaya | 28,027 | 104 | 5.57% | 11.44% | 2.05 |
Populus trichocarpa | 41,434 | 87 | 8.23% | 9.57% | 1.16 |
Vitis vinifera | 26,504 | 54 | 5.27% | 5.94% | 1.13 |
Solanum lycopersicum | 34,813 | 89 | 6.92% | 9.79% | 1.41 |
Physcomitrella patens | 32,400 | 23 | 6.44% | 2.53% | 0.39 |
Ostreococcus lucimarinus | 7,805 | 1 | 1.55% | 0.11% | 0.07 |
Chlamydomonas reinhardtii | 17,819 | 2 | 3.54% | 0.22% | 0.06 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 136 | 14.69% | 14.96% | 1.02 |
Panicoideae | 3 | 109,485 | 194 | 21.76% | 21.34% | 0.98 |
Oryza | 2 | 89,940 | 125 | 17.87% | 13.75% | 0.77 |
Pooideae | 2 | 50,950 | 85 | 10.12% | 9.35% | 0.92 |
BEP_Clade | 4 | 140,890 | 210 | 28% | 23.1% | 0.83 |
Poaceae | 7 | 250,375 | 404 | 49.75% | 44.44% | 0.89 |
Monocots | 8 | 287,013 | 488 | 57.03% | 53.69% | 0.94 |
Brassicales | 2 | 55,443 | 165 | 11.02% | 18.15% | 1.65 |
Rosids1 | 3 | 96,877 | 252 | 19.25% | 27.72% | 1.44 |
Rosids | 4 | 123,381 | 306 | 24.52% | 33.66% | 1.37 |
Dicots | 5 | 158,194 | 395 | 31.44% | 43.45% | 1.38 |
Angiosperms | 13 | 445,207 | 883 | 88.47% | 97.14% | 1.1 |
Embryophyta | 14 | 477,607 | 906 | 94.91% | 99.67% | 1.05 |
Chlorophyta | 2 | 25,624 | 3 | 5.09% | 0.33% | 0.06 |
Viridiplantae | 16 | 503,231 | 909 | 100% | 100% | 1 |