Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M000032
- Gene count gene family
- 887
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 15 | 7.81% | 1.69% | 0.22 |
Sorghum bicolor | 34,609 | 211 | 6.88% | 23.79% | 3.46 |
Setaria italica | 35,553 | 97 | 7.06% | 10.94% | 1.55 |
Oryza sativa ssp. japonica | 40,738 | 32 | 8.1% | 3.61% | 0.45 |
Oryza sativa ssp. indica | 49,202 | 184 | 9.78% | 20.74% | 2.12 |
Brachypodium distachyon | 26,632 | 89 | 5.29% | 10.03% | 1.9 |
Hordeum vulgare | 24,318 | 59 | 4.83% | 6.65% | 1.38 |
Musa acuminata | 36,638 | 10 | 7.28% | 1.13% | 0.16 |
Arabidopsis thaliana | 27,416 | 18 | 5.45% | 2.03% | 0.37 |
Carica papaya | 28,027 | 31 | 5.57% | 3.49% | 0.63 |
Populus trichocarpa | 41,434 | 57 | 8.23% | 6.43% | 0.78 |
Vitis vinifera | 26,504 | 29 | 5.27% | 3.27% | 0.62 |
Solanum lycopersicum | 34,813 | 55 | 6.92% | 6.2% | 0.9 |
Physcomitrella patens | 32,400 | 0 | 6.44% | 0% | 0 |
Ostreococcus lucimarinus | 7,805 | 0 | 1.55% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 0 | 3.54% | 0% | 0 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 226 | 14.69% | 25.48% | 1.73 |
Panicoideae | 3 | 109,485 | 323 | 21.76% | 36.41% | 1.67 |
Oryza | 2 | 89,940 | 216 | 17.87% | 24.35% | 1.36 |
Pooideae | 2 | 50,950 | 148 | 10.12% | 16.69% | 1.65 |
BEP_Clade | 4 | 140,890 | 364 | 28% | 41.04% | 1.47 |
Poaceae | 7 | 250,375 | 687 | 49.75% | 77.45% | 1.56 |
Monocots | 8 | 287,013 | 697 | 57.03% | 78.58% | 1.38 |
Brassicales | 2 | 55,443 | 49 | 11.02% | 5.52% | 0.5 |
Rosids1 | 3 | 96,877 | 106 | 19.25% | 11.95% | 0.62 |
Rosids | 4 | 123,381 | 135 | 24.52% | 15.22% | 0.62 |
Dicots | 5 | 158,194 | 190 | 31.44% | 21.42% | 0.68 |
Angiosperms | 13 | 445,207 | 887 | 88.47% | 100% | 1.13 |
Embryophyta | 14 | 477,607 | 887 | 94.91% | 100% | 1.05 |
Chlorophyta | 2 | 25,624 | 0 | 5.09% | 0% | 0 |
Viridiplantae | 16 | 503,231 | 887 | 100% | 100% | 1 |