Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M000030
- Gene count gene family
- 1059
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 75 | 7.81% | 7.08% | 0.91 |
Sorghum bicolor | 34,609 | 58 | 6.88% | 5.48% | 0.8 |
Setaria italica | 35,553 | 59 | 7.06% | 5.57% | 0.79 |
Oryza sativa ssp. japonica | 40,738 | 54 | 8.1% | 5.1% | 0.63 |
Oryza sativa ssp. indica | 49,202 | 58 | 9.78% | 5.48% | 0.56 |
Brachypodium distachyon | 26,632 | 66 | 5.29% | 6.23% | 1.18 |
Hordeum vulgare | 24,318 | 57 | 4.83% | 5.38% | 1.11 |
Musa acuminata | 36,638 | 109 | 7.28% | 10.29% | 1.41 |
Arabidopsis thaliana | 27,416 | 59 | 5.45% | 5.57% | 1.02 |
Carica papaya | 28,027 | 70 | 5.57% | 6.61% | 1.19 |
Populus trichocarpa | 41,434 | 109 | 8.23% | 10.29% | 1.25 |
Vitis vinifera | 26,504 | 51 | 5.27% | 4.82% | 0.91 |
Solanum lycopersicum | 34,813 | 76 | 6.92% | 7.18% | 1.04 |
Physcomitrella patens | 32,400 | 85 | 6.44% | 8.03% | 1.25 |
Ostreococcus lucimarinus | 7,805 | 32 | 1.55% | 3.02% | 1.95 |
Chlamydomonas reinhardtii | 17,819 | 41 | 3.54% | 3.87% | 1.09 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 133 | 14.69% | 12.56% | 0.86 |
Panicoideae | 3 | 109,485 | 192 | 21.76% | 18.13% | 0.83 |
Oryza | 2 | 89,940 | 112 | 17.87% | 10.58% | 0.59 |
Pooideae | 2 | 50,950 | 123 | 10.12% | 11.61% | 1.15 |
BEP_Clade | 4 | 140,890 | 235 | 28% | 22.19% | 0.79 |
Poaceae | 7 | 250,375 | 427 | 49.75% | 40.32% | 0.81 |
Monocots | 8 | 287,013 | 536 | 57.03% | 50.61% | 0.89 |
Brassicales | 2 | 55,443 | 129 | 11.02% | 12.18% | 1.11 |
Rosids1 | 3 | 96,877 | 238 | 19.25% | 22.47% | 1.17 |
Rosids | 4 | 123,381 | 289 | 24.52% | 27.29% | 1.11 |
Dicots | 5 | 158,194 | 365 | 31.44% | 34.47% | 1.1 |
Angiosperms | 13 | 445,207 | 901 | 88.47% | 85.08% | 0.96 |
Embryophyta | 14 | 477,607 | 986 | 94.91% | 93.11% | 0.98 |
Chlorophyta | 2 | 25,624 | 73 | 5.09% | 6.89% | 1.35 |
Viridiplantae | 16 | 503,231 | 1,059 | 100% | 100% | 1 |