Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M000019
- Gene count gene family
- 1569
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 109 | 7.81% | 6.95% | 0.89 |
Sorghum bicolor | 34,609 | 125 | 6.88% | 7.97% | 1.16 |
Setaria italica | 35,553 | 147 | 7.06% | 9.37% | 1.33 |
Oryza sativa ssp. japonica | 40,738 | 119 | 8.1% | 7.58% | 0.94 |
Oryza sativa ssp. indica | 49,202 | 146 | 9.78% | 9.31% | 0.95 |
Brachypodium distachyon | 26,632 | 114 | 5.29% | 7.27% | 1.37 |
Hordeum vulgare | 24,318 | 111 | 4.83% | 7.07% | 1.46 |
Musa acuminata | 36,638 | 91 | 7.28% | 5.8% | 0.8 |
Arabidopsis thaliana | 27,416 | 107 | 5.45% | 6.82% | 1.25 |
Carica papaya | 28,027 | 68 | 5.57% | 4.33% | 0.78 |
Populus trichocarpa | 41,434 | 156 | 8.23% | 9.94% | 1.21 |
Vitis vinifera | 26,504 | 96 | 5.27% | 6.12% | 1.16 |
Solanum lycopersicum | 34,813 | 110 | 6.92% | 7.01% | 1.01 |
Physcomitrella patens | 32,400 | 70 | 6.44% | 4.46% | 0.69 |
Ostreococcus lucimarinus | 7,805 | 0 | 1.55% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 0 | 3.54% | 0% | 0 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 234 | 14.69% | 14.91% | 1.01 |
Panicoideae | 3 | 109,485 | 381 | 21.76% | 24.28% | 1.12 |
Oryza | 2 | 89,940 | 265 | 17.87% | 16.89% | 0.95 |
Pooideae | 2 | 50,950 | 225 | 10.12% | 14.34% | 1.42 |
BEP_Clade | 4 | 140,890 | 490 | 28% | 31.23% | 1.12 |
Poaceae | 7 | 250,375 | 871 | 49.75% | 55.51% | 1.12 |
Monocots | 8 | 287,013 | 962 | 57.03% | 61.31% | 1.08 |
Brassicales | 2 | 55,443 | 175 | 11.02% | 11.15% | 1.01 |
Rosids1 | 3 | 96,877 | 331 | 19.25% | 21.1% | 1.1 |
Rosids | 4 | 123,381 | 427 | 24.52% | 27.21% | 1.11 |
Dicots | 5 | 158,194 | 537 | 31.44% | 34.23% | 1.09 |
Angiosperms | 13 | 445,207 | 1,499 | 88.47% | 95.54% | 1.08 |
Embryophyta | 14 | 477,607 | 1,569 | 94.91% | 100% | 1.05 |
Chlorophyta | 2 | 25,624 | 0 | 5.09% | 0% | 0 |
Viridiplantae | 16 | 503,231 | 1,569 | 100% | 100% | 1 |