Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03M000007
- Gene count gene family
- 2343
- Total coding gene count
- 503,231
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Zea mays | 39,323 | 183 | 7.81% | 7.81% | 1 |
Sorghum bicolor | 34,609 | 221 | 6.88% | 9.43% | 1.37 |
Setaria italica | 35,553 | 227 | 7.06% | 9.69% | 1.37 |
Oryza sativa ssp. japonica | 40,738 | 226 | 8.1% | 9.65% | 1.19 |
Oryza sativa ssp. indica | 49,202 | 237 | 9.78% | 10.12% | 1.03 |
Brachypodium distachyon | 26,632 | 171 | 5.29% | 7.3% | 1.38 |
Hordeum vulgare | 24,318 | 150 | 4.83% | 6.4% | 1.33 |
Musa acuminata | 36,638 | 99 | 7.28% | 4.23% | 0.58 |
Arabidopsis thaliana | 27,416 | 115 | 5.45% | 4.91% | 0.9 |
Carica papaya | 28,027 | 78 | 5.57% | 3.33% | 0.6 |
Populus trichocarpa | 41,434 | 266 | 8.23% | 11.35% | 1.38 |
Vitis vinifera | 26,504 | 137 | 5.27% | 5.85% | 1.11 |
Solanum lycopersicum | 34,813 | 215 | 6.92% | 9.18% | 1.33 |
Physcomitrella patens | 32,400 | 16 | 6.44% | 0.68% | 0.11 |
Ostreococcus lucimarinus | 7,805 | 0 | 1.55% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 2 | 3.54% | 0.09% | 0.03 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Andropogoneae | 2 | 73,932 | 404 | 14.69% | 17.24% | 1.17 |
Panicoideae | 3 | 109,485 | 631 | 21.76% | 26.93% | 1.24 |
Oryza | 2 | 89,940 | 463 | 17.87% | 19.76% | 1.11 |
Pooideae | 2 | 50,950 | 321 | 10.12% | 13.7% | 1.35 |
BEP_Clade | 4 | 140,890 | 784 | 28% | 33.46% | 1.2 |
Poaceae | 7 | 250,375 | 1,415 | 49.75% | 60.39% | 1.21 |
Monocots | 8 | 287,013 | 1,514 | 57.03% | 64.62% | 1.13 |
Brassicales | 2 | 55,443 | 193 | 11.02% | 8.24% | 0.75 |
Rosids1 | 3 | 96,877 | 459 | 19.25% | 19.59% | 1.02 |
Rosids | 4 | 123,381 | 596 | 24.52% | 25.44% | 1.04 |
Dicots | 5 | 158,194 | 811 | 31.44% | 34.61% | 1.1 |
Angiosperms | 13 | 445,207 | 2,325 | 88.47% | 99.23% | 1.12 |
Embryophyta | 14 | 477,607 | 2,341 | 94.91% | 99.91% | 1.05 |
Chlorophyta | 2 | 25,624 | 2 | 5.09% | 0.09% | 0.02 |
Viridiplantae | 16 | 503,231 | 2,343 | 100% | 100% | 1 |