PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	2	17	CH_ath_203	9	74	0.00000169728
Arabidopsis thaliana	mitochondrial	17	CH_ath_27	16	65	2.19891e-19
Arabidopsis thaliana	2	18	CH_ath_64	10	94	0.000000545031
Arabidopsis thaliana	mitochondrial	18	CH_ath_16	29	136	3.72412e-36
Arabidopsis thaliana	2	19	CH_ath_79	8	74	0.0000372133
Arabidopsis thaliana	mitochondrial	19	CH_ath_35	14	75	0.00000000000000727023
Arabidopsis thaliana	mitochondrial	19	CH_ath_16	16	65	9.96577e-20
Arabidopsis thaliana	mitochondrial	20	CH_ath_15	27	136	4.67886e-33
Oryza sativa ssp. japonica	12	17	CH_osa_121	7	27	0.000000011391
Oryza sativa ssp. japonica	12	19	CH_osa_10	6	27	0.00000138669
Setaria italica	scaffold_12	17	CH_sit_8	20	59	5.37792e-30
Setaria italica	scaffold_12	18	CH_sit_9	20	59	5.37792e-30
Setaria italica	scaffold_12	19	CH_sit_2	18	59	3.09205e-26
Setaria italica	scaffold_12	20	CH_sit_2	18	59	3.09205e-26
Solanum lycopersicum	ch08	17	CH_sly_175	5	5	0.000000149005
Solanum lycopersicum	ch08	19	CH_sly_16	4	4	0.0000201788
Zea mays	2	17	CH_zma_134	4	5	0.0000537189
Zea mays	mitochondrial	17	CH_zma_36	10	59	0.00000000316972
Zea mays	mitochondrial	18	CH_zma_15	14	176	0.00000000163756
Zea mays	2	19	CH_zma_6	4	5	0.0000387566
Zea mays	mitochondrial	19	CH_zma_1	10	59	0.00000000139269
Zea mays	mitochondrial	20	CH_zma_2	10	59	0.00000000139269

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V