PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 35.2
Description: not assigned.unknown

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	17	CH_ath_384	13	13	0.000728477
Arabidopsis thaliana	mitochondrial	17	CH_ath_265	30	42	0.0000244694
Arabidopsis thaliana	mitochondrial	17	CH_ath_264	30	42	0.0000244694
Arabidopsis thaliana	2	18	CH_ath_88	117	286	0.000463033
Arabidopsis thaliana	2	18	CH_ath_75	125	299	0.000030996
Arabidopsis thaliana	4	18	CH_ath_89	106	253	0.000489026
Arabidopsis thaliana	5	18	CH_ath_78	102	232	0.0000415873
Arabidopsis thaliana	5	18	CH_ath_74	125	298	0.0000241237
Arabidopsis thaliana	mitochondrial	18	CH_ath_40	81	135	0.00000000000142319
Arabidopsis thaliana	mitochondrial	19	CH_ath_103	30	48	0.000698882
Arabidopsis thaliana	mitochondrial	19	CH_ath_71	30	43	0.000013179
Arabidopsis thaliana	2	20	CH_ath_39	117	300	0.000322285
Arabidopsis thaliana	2	20	CH_ath_28	124	299	0.00000121071
Arabidopsis thaliana	2	20	CH_ath_42	116	300	0.000652614
Arabidopsis thaliana	3	20	CH_ath_43	106	269	0.000827187
Arabidopsis thaliana	4	20	CH_ath_37	117	298	0.00020582
Arabidopsis thaliana	5	20	CH_ath_33	98	232	0.000040533
Arabidopsis thaliana	5	20	CH_ath_38	90	214	0.000243294
Arabidopsis thaliana	mitochondrial	20	CH_ath_22	62	99	0.000000000020164
Brachypodium distachyon	Bd4	17	CH_bdi_247	15	15	0.00060638
Brachypodium distachyon	Bd4	18	CH_bdi_28	108	206	0.00000288779
Chlamydomonas reinhardtii	chromosome_15	18	CH_cre_5	149	174	0.000877702
Chlamydomonas reinhardtii	chromosome_2	18	CH_cre_4	66	69	0.00023002
Oryza sativa ssp. japonica	1	18	CH_osa_57	139	165	0.000000146658
Oryza sativa ssp. japonica	10	18	CH_osa_111	43	44	0.000156692
Oryza sativa ssp. japonica	10	18	CH_osa_50	150	177	0.0000000072535
Oryza sativa ssp. japonica	10	18	CH_osa_68	88	98	0.000000955499
Oryza sativa ssp. japonica	11	18	CH_osa_106	149	187	0.0000993781
Oryza sativa ssp. japonica	11	18	CH_osa_65	150	182	0.000000697441
Oryza sativa ssp. japonica	11	18	CH_osa_47	150	176	0.00000000266769
Oryza sativa ssp. japonica	11	18	CH_osa_117	50	53	0.000370456
Oryza sativa ssp. japonica	12	18	CH_osa_121	150	192	0.000563965
Oryza sativa ssp. japonica	12	18	CH_osa_81	141	172	0.00000614237
Oryza sativa ssp. japonica	12	18	CH_osa_109	141	176	0.000135158
Oryza sativa ssp. japonica	12	18	CH_osa_92	64	69	0.0000193309
Oryza sativa ssp. japonica	2	18	CH_osa_80	146	179	0.00000599076
Oryza sativa ssp. japonica	3	18	CH_osa_42	150	173	0.000000000108908
Oryza sativa ssp. japonica	4	18	CH_osa_43	150	173	0.000000000108908
Oryza sativa ssp. japonica	4	18	CH_osa_59	88	97	0.000000233786
Oryza sativa ssp. japonica	4	18	CH_osa_74	150	184	0.000003607
Oryza sativa ssp. japonica	4	18	CH_osa_77	99	114	0.0000053245
Oryza sativa ssp. japonica	4	18	CH_osa_103	121	147	0.0000767562
Oryza sativa ssp. japonica	5	18	CH_osa_82	107	125	0.00000641394
Oryza sativa ssp. japonica	5	18	CH_osa_98	150	187	0.0000356567
Oryza sativa ssp. japonica	5	18	CH_osa_93	147	182	0.0000206195
Oryza sativa ssp. japonica	6	18	CH_osa_41	146	167	0.00000000005263
Oryza sativa ssp. japonica	7	18	CH_osa_124	59	65	0.000837849
Oryza sativa ssp. japonica	7	18	CH_osa_114	148	187	0.000268201
Oryza sativa ssp. japonica	7	18	CH_osa_122	150	191	0.000563965
Oryza sativa ssp. japonica	8	18	CH_osa_72	147	179	0.00000190651
Oryza sativa ssp. japonica	8	18	CH_osa_69	149	181	0.000000976303
Oryza sativa ssp. japonica	8	18	CH_osa_44	89	94	0.000000000175634
Oryza sativa ssp. japonica	8	18	CH_osa_102	150	188	0.0000732828
Oryza sativa ssp. japonica	8	18	CH_osa_71	150	183	0.00000160544
Oryza sativa ssp. japonica	9	18	CH_osa_88	100	116	0.0000108974
Oryza sativa ssp. japonica	9	18	CH_osa_95	60	64	0.000021537
Oryza sativa ssp. japonica	10	19	CH_osa_45	30	30	0.000841303
Oryza sativa ssp. japonica	1	20	CH_osa_38	149	199	0.000229437
Oryza sativa ssp. japonica	10	20	CH_osa_6	149	181	0.00000000031848
Oryza sativa ssp. japonica	10	20	CH_osa_20	96	115	0.00000439767
Oryza sativa ssp. japonica	11	20	CH_osa_12	147	187	0.000000570977
Oryza sativa ssp. japonica	11	20	CH_osa_16	150	193	0.00000173699
Oryza sativa ssp. japonica	11	20	CH_osa_25	149	194	0.00000978567
Oryza sativa ssp. japonica	11	20	CH_osa_14	150	192	0.000000846062
Oryza sativa ssp. japonica	12	20	CH_osa_44	72	86	0.000798752
Oryza sativa ssp. japonica	12	20	CH_osa_10	138	172	0.000000147679
Oryza sativa ssp. japonica	12	20	CH_osa_18	139	177	0.00000235718
Oryza sativa ssp. japonica	12	20	CH_osa_19	63	69	0.00000236398
Oryza sativa ssp. japonica	3	20	CH_osa_5	150	182	0.000000000211229
Oryza sativa ssp. japonica	4	20	CH_osa_36	57	64	0.000211062
Oryza sativa ssp. japonica	4	20	CH_osa_15	96	114	0.00000158287
Oryza sativa ssp. japonica	4	20	CH_osa_34	79	94	0.000109404
Oryza sativa ssp. japonica	4	20	CH_osa_39	150	201	0.000301244
Oryza sativa ssp. japonica	5	20	CH_osa_45	67	79	0.000870771
Oryza sativa ssp. japonica	5	20	CH_osa_41	133	176	0.000567519
Oryza sativa ssp. japonica	6	20	CH_osa_3	150	178	0.0000000000039422
Oryza sativa ssp. japonica	6	20	CH_osa_46	42	45	0.000887266
Oryza sativa ssp. japonica	7	20	CH_osa_27	150	197	0.0000259755
Oryza sativa ssp. japonica	7	20	CH_osa_33	148	196	0.00009432
Oryza sativa ssp. japonica	7	20	CH_osa_23	150	195	0.00000694594
Oryza sativa ssp. japonica	8	20	CH_osa_40	150	202	0.000535869
Oryza sativa ssp. japonica	8	20	CH_osa_28	150	197	0.0000259755
Oryza sativa ssp. japonica	8	20	CH_osa_7	81	88	0.00000000111988
Oryza sativa ssp. japonica	8	20	CH_osa_32	141	184	0.0000394183
Oryza sativa ssp. japonica	9	20	CH_osa_29	148	194	0.0000265699
Oryza sativa ssp. japonica	9	20	CH_osa_30	48	51	0.0000350507
Physcomitrella patens	scaffold_208	18	CH_ppa_1	67	78	0.000182736
Populus trichocarpa	Chr01	17	CH_ptr_265	23	23	0.00000306479
Populus trichocarpa	Chr03	17	CH_ptr_353	25	27	0.0000600956
Populus trichocarpa	Chr04	17	CH_ptr_264	23	23	0.00000306479
Populus trichocarpa	Chr15	17	CH_ptr_383	19	19	0.00017636
Populus trichocarpa	Chr16	17	CH_ptr_440	18	18	0.000485682
Populus trichocarpa	Chr01	18	CH_ptr_91	23	23	0.00000306479
Populus trichocarpa	Chr03	18	CH_ptr_106	25	27	0.0000600956
Populus trichocarpa	Chr04	18	CH_ptr_90	23	23	0.00000306479
Populus trichocarpa	Chr14	18	CH_ptr_95	150	273	0.0000106131
Populus trichocarpa	Chr15	18	CH_ptr_110	19	19	0.00017636
Populus trichocarpa	Chr16	18	CH_ptr_114	18	18	0.000485682
Populus trichocarpa	Chr02	19	CH_ptr_17	23	27	0.00092034
Populus trichocarpa	Chr02	20	CH_ptr_4	23	27	0.00092034
Setaria italica	scaffold_2	17	CH_sit_395	21	21	0.000323061
Setaria italica	scaffold_4	17	CH_sit_433	30	34	0.000692125
Setaria italica	scaffold_2	18	CH_sit_77	54	71	0.00010972
Setaria italica	scaffold_2	18	CH_sit_81	21	21	0.000323061
Setaria italica	scaffold_4	18	CH_sit_52	44	50	0.000000353038
Setaria italica	scaffold_1	20	CH_sit_6	142	254	0.0000302973
Setaria italica	scaffold_3	20	CH_sit_5	149	265	0.0000067761
Solanum lycopersicum	ch00	17	CH_sly_433	28	31	0.00048972
Solanum lycopersicum	ch00	17	CH_sly_436	30	34	0.000509915
Solanum lycopersicum	ch00	17	CH_sly_167	30	30	0.0000000825726
Solanum lycopersicum	ch01	17	CH_sly_437	30	34	0.000509915
Solanum lycopersicum	ch03	17	CH_sly_166	30	30	0.0000000825726
Solanum lycopersicum	ch04	17	CH_sly_284	30	32	0.0000149318
Solanum lycopersicum	ch05	17	CH_sly_345	30	33	0.000099241
Solanum lycopersicum	ch05	17	CH_sly_432	28	31	0.00048972
Solanum lycopersicum	ch06	17	CH_sly_344	30	33	0.000099241
Solanum lycopersicum	ch08	17	CH_sly_391	24	25	0.00026537
Solanum lycopersicum	ch08	17	CH_sly_214	30	31	0.00000154526
Solanum lycopersicum	ch09	17	CH_sly_215	30	31	0.00000154526
Solanum lycopersicum	ch09	17	CH_sly_349	22	22	0.000104259
Solanum lycopersicum	ch10	17	CH_sly_336	28	30	0.0000783136
Solanum lycopersicum	ch10	17	CH_sly_216	30	31	0.00000154526
Solanum lycopersicum	ch00	18	CH_sly_15	150	193	7.39062e-21
Solanum lycopersicum	ch00	18	CH_sly_25	149	198	3.48241e-18
Solanum lycopersicum	ch01	18	CH_sly_37	150	210	0.0000000000000123146
Solanum lycopersicum	ch01	18	CH_sly_57	130	194	0.00000000721323
Solanum lycopersicum	ch01	18	CH_sly_50	148	218	0.0000000000290134
Solanum lycopersicum	ch02	18	CH_sly_66	136	209	0.000000059165
Solanum lycopersicum	ch03	18	CH_sly_32	136	183	0.00000000000000173002
Solanum lycopersicum	ch03	18	CH_sly_92	40	49	0.00023059
Solanum lycopersicum	ch04	18	CH_sly_34	108	137	0.00000000000000533204
Solanum lycopersicum	ch05	18	CH_sly_47	140	199	0.00000000000156625
Solanum lycopersicum	ch06	18	CH_sly_54	86	112	0.00000000044329
Solanum lycopersicum	ch07	18	CH_sly_60	139	212	0.0000000142483
Solanum lycopersicum	ch07	18	CH_sly_56	150	229	0.00000000193516
Solanum lycopersicum	ch08	18	CH_sly_22	142	184	4.85387e-19
Solanum lycopersicum	ch09	18	CH_sly_24	149	198	3.48241e-18
Solanum lycopersicum	ch10	18	CH_sly_48	150	219	0.00000000000553586
Solanum lycopersicum	ch11	18	CH_sly_44	142	200	0.000000000000256945
Solanum lycopersicum	ch12	18	CH_sly_53	143	213	0.000000000366368
Solanum lycopersicum	ch12	18	CH_sly_78	71	98	0.00000940741
Solanum lycopersicum	ch12	18	CH_sly_89	63	88	0.000205983
Solanum lycopersicum	ch00	19	CH_sly_34	29	35	0.000401727
Solanum lycopersicum	ch00	19	CH_sly_18	30	35	0.0000431136
Solanum lycopersicum	ch00	19	CH_sly_38	30	37	0.00059219
Solanum lycopersicum	ch03	19	CH_sly_36	22	24	0.000523796
Solanum lycopersicum	ch05	19	CH_sly_21	29	34	0.000104593
Solanum lycopersicum	ch07	19	CH_sly_31	28	33	0.00025254
Solanum lycopersicum	ch12	19	CH_sly_42	28	34	0.000942916
Solanum lycopersicum	ch00	20	CH_sly_1	149	195	5.57837e-27
Solanum lycopersicum	ch01	20	CH_sly_5	150	254	0.000000000513598
Solanum lycopersicum	ch01	20	CH_sly_8	76	108	0.00000000569344
Solanum lycopersicum	ch01	20	CH_sly_11	148	260	0.0000000452577
Solanum lycopersicum	ch03	20	CH_sly_4	150	254	0.000000000513598
Solanum lycopersicum	ch04	20	CH_sly_14	150	268	0.000000191775
Solanum lycopersicum	ch05	20	CH_sly_13	118	198	0.000000134466
Solanum lycopersicum	ch05	20	CH_sly_9	121	199	0.0000000100646
Solanum lycopersicum	ch06	20	CH_sly_20	70	111	0.000105354
Solanum lycopersicum	ch07	20	CH_sly_6	144	242	0.000000000725672
Solanum lycopersicum	ch08	20	CH_sly_2	150	237	0.0000000000000852813
Solanum lycopersicum	ch09	20	CH_sly_3	140	221	0.00000000000100905
Solanum lycopersicum	ch10	20	CH_sly_7	148	255	0.00000000546814
Solanum lycopersicum	ch11	20	CH_sly_10	144	250	0.0000000261054
Solanum lycopersicum	ch12	20	CH_sly_19	58	86	0.0000566507
Solanum lycopersicum	ch12	20	CH_sly_17	136	247	0.00000832855
Vitis vinifera	chr15	17	CH_vvi_336	27	32	0.000123285
Vitis vinifera	chr19	17	CH_vvi_444	20	22	0.000957177
Vitis vinifera	chr5	17	CH_vvi_286	19	19	0.0000266583
Vitis vinifera	chr7	17	CH_vvi_349	28	34	0.000186512
Vitis vinifera	chrUn	17	CH_vvi_328	30	37	0.000108075
Vitis vinifera	chr14	18	CH_vvi_106	134	265	0.00022803
Vitis vinifera	chr15	18	CH_vvi_96	99	178	0.0000351263
Vitis vinifera	chr15	18	CH_vvi_100	27	32	0.000123285
Vitis vinifera	chr19	18	CH_vvi_115	20	22	0.000957177
Vitis vinifera	chr5	18	CH_vvi_94	19	19	0.0000266583
Vitis vinifera	chr7	18	CH_vvi_105	28	34	0.000186512
Vitis vinifera	chr9	18	CH_vvi_97	147	292	0.0000653899
Vitis vinifera	chrUn	18	CH_vvi_88	149	288	0.00000427351
Vitis vinifera	chrUn	18	CH_vvi_77	51	69	0.000000238117
Vitis vinifera	chr14	20	CH_vvi_7	123	258	0.000154646
Vitis vinifera	chr15	20	CH_vvi_5	120	245	0.0000311031
Zea mays	3	17	CH_zma_155	30	34	0.000144146
Zea mays	6	17	CH_zma_222	24	26	0.000713864
Zea mays	2	18	CH_zma_28	145	247	0.0000180229
Zea mays	2	18	CH_zma_32	144	252	0.000249994
Zea mays	3	18	CH_zma_18	150	241	0.0000000170257
Zea mays	5	18	CH_zma_25	66	91	0.00000429107
Zea mays	6	18	CH_zma_22	63	84	0.00000102555
Zea mays	7	18	CH_zma_19	145	235	0.000000107328
Zea mays	mitochondrial	18	CH_zma_21	58	75	0.000000260752
Zea mays	3	19	CH_zma_7	30	35	0.0000566105
Zea mays	1	20	CH_zma_10	38	50	0.000288797
Zea mays	2	20	CH_zma_8	150	281	0.0000616031
Zea mays	3	20	CH_zma_1	148	248	0.000000000859727
Zea mays	5	20	CH_zma_4	150	268	0.000000645669
Zea mays	6	20	CH_zma_5	59	84	0.0000057525
Zea mays	6	20	CH_zma_6	121	212	0.0000102565
Zea mays	7	20	CH_zma_3	148	259	0.000000103795
Zea mays	mitochondrial	20	CH_zma_9	51	75	0.000271694

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V