PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	17	CH_ath_310	14	24	0.000104966
Arabidopsis thaliana	3	17	CH_ath_128	18	26	0.00000000753279
Arabidopsis thaliana	5	17	CH_ath_170	11	11	0.000000163032
Arabidopsis thaliana	5	17	CH_ath_14	30	32	1.76825e-24
Arabidopsis thaliana	1	18	CH_ath_82	14	24	0.000104966
Arabidopsis thaliana	3	18	CH_ath_50	18	26	0.00000000753279
Arabidopsis thaliana	5	18	CH_ath_59	11	11	0.000000163032
Arabidopsis thaliana	5	18	CH_ath_24	31	33	1.74959e-25
Brachypodium distachyon	Bd3	17	CH_bdi_230	7	7	0.000347776
Brachypodium distachyon	Bd4	17	CH_bdi_231	7	7	0.000347776
Setaria italica	scaffold_2	17	CH_sit_225	11	16	0.00000412608
Setaria italica	scaffold_5	17	CH_sit_331	7	7	0.0000980397
Setaria italica	scaffold_6	17	CH_sit_233	8	8	0.00000586413
Setaria italica	scaffold_2	18	CH_sit_60	11	16	0.00000412608
Setaria italica	scaffold_9	18	CH_sit_82	43	278	0.000415146
Vitis vinifera	chr3	17	CH_vvi_222	14	25	0.00000198625
Vitis vinifera	chr3	18	CH_vvi_85	14	25	0.00000198625
Zea mays	7	17	CH_zma_234	8	11	0.000953386

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V