Functional clusters   top

Information

Type
Mapman term
Identifier
34.3
Description
transport.amino acids

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brachypodium distachyonBd117CH_bdi_268330.000812723
Brachypodium distachyonBd217CH_bdi_266330.000812723
Brachypodium distachyonBd317CH_bdi_267330.000812723
Oryza sativa ssp. japonica117CH_osa_108560.00000000617697
Oryza sativa ssp. japonica317CH_osa_307490.00007344
Oryza sativa ssp. japonica417CH_osa_383330.000330861
Populus trichocarpaChr0217CH_ptr_2246170.000000479908
Populus trichocarpaChr1117CH_ptr_354460.0000615509
Setaria italicascaffold_517CH_sit_130550.00000000985178
Setaria italicascaffold_617CH_sit_129550.00000000985178
Setaria italicascaffold_717CH_sit_271450.0000162321
Solanum lycopersicumch0317CH_sly_456330.00064564
Solanum lycopersicumch0717CH_sly_457330.00064564
Vitis viniferachr117CH_vvi_1557220.0000000343817
Vitis viniferachr1417CH_vvi_344470.000165485
Vitis viniferachr1917CH_vvi_244440.00000476949
Vitis viniferachr417CH_vvi_171560.000000102011
Vitis viniferachr118CH_vvi_114102500.000883845
Zea mays117CH_zma_109450.0000103739
Zea mays1017CH_zma_146470.000072285
Zea mays617CH_zma_16790.00000000000161582

Functional clusters experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1GOPrimary GO data only.230800.001X
2GOPrimary and orthology projected GO data.230800.001X
3GOAll GO data.230800.001X
4GOPrimary GO data only.101503000.001X
5GOPrimary and orthology projected GO data.101503000.001X
6GOAll GO data.101503000.001X
7GOPrimary GO data only.230800.001V
8GOPrimary and orthology projected GO data.230800.001V
9GOAll GO data.230800.001V
10GOPrimary GO data only.101503000.001V
11GOPrimary and orthology projected GO data.101503000.001V
12GOAll GO data.101503000.001V
13InterProNo filter applied.230800.001X
14InterProNo filter applied.101503000.001X
15InterProNo filter applied.230800.001V
16InterProNo filter applied.101503000.001V
17MapManNo filter applied.230800.001X
18MapManNo filter applied.101503000.001X
19MapManNo filter applied.230800.001V
20MapManNo filter applied.101503000.001V