PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 34.16
Description: transport.ABC transporters and multidrug resistance systems

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	17	CH_ath_237	5	10	0.00000642908
Arabidopsis thaliana	3	17	CH_ath_75	7	7	0.000000000000350118
Arabidopsis thaliana	3	17	CH_ath_275	4	5	0.00003472
Arabidopsis thaliana	4	17	CH_ath_238	4	4	0.00000696494
Arabidopsis thaliana	5	17	CH_ath_309	4	6	0.000103847
Brachypodium distachyon	Bd2	17	CH_bdi_72	6	9	0.0000000326749
Brachypodium distachyon	Bd4	17	CH_bdi_164	4	4	0.000016519
Chlamydomonas reinhardtii	chromosome_8	17	CH_cre_55	4	6	0.000279035
Oryza sativa ssp. japonica	1	17	CH_osa_301	4	6	0.0000477175
Oryza sativa ssp. japonica	9	17	CH_osa_303	5	17	0.0000520732
Populus trichocarpa	Chr01	17	CH_ptr_331	4	4	0.0000336612
Populus trichocarpa	Chr01	17	CH_ptr_332	4	4	0.0000336612
Populus trichocarpa	Chr06	17	CH_ptr_378	4	5	0.000167585
Populus trichocarpa	Chr08	17	CH_ptr_379	4	5	0.000167585
Populus trichocarpa	Chr14	17	CH_ptr_238	5	6	0.00000107038
Populus trichocarpa	Chr01	19	CH_ptr_7	4	4	0.0000131894
Setaria italica	scaffold_5	17	CH_sit_320	4	5	0.0000610125
Setaria italica	scaffold_5	17	CH_sit_363	4	6	0.000182411
Setaria italica	scaffold_5	17	CH_sit_264	5	10	0.0000128643
Setaria italica	scaffold_7	17	CH_sit_256	4	5	0.0000122444
Setaria italica	scaffold_7	18	CH_sit_75	11	215	0.000107581
Solanum lycopersicum	ch03	17	CH_sly_361	4	5	0.000143824
Solanum lycopersicum	ch05	17	CH_sly_362	4	5	0.000143824
Solanum lycopersicum	ch06	17	CH_sly_176	5	5	0.000000153076
Solanum lycopersicum	ch12	17	CH_sly_177	5	5	0.000000153076
Vitis vinifera	chr10	17	CH_vvi_149	6	7	0.0000000248369
Vitis vinifera	chr13	17	CH_vvi_260	5	7	0.0000104706
Vitis vinifera	chr13	17	CH_vvi_384	4	5	0.000352664
Vitis vinifera	chr19	17	CH_vvi_111	7	8	0.000000000199731
Vitis vinifera	chr4	17	CH_vvi_383	4	5	0.000352664
Vitis vinifera	chr6	17	CH_vvi_309	4	4	0.0000709392
Vitis vinifera	chr9	17	CH_vvi_8	19	21	5.00601e-35
Vitis vinifera	chr9	17	CH_vvi_188	6	9	0.000000294436
Vitis vinifera	chr6	18	CH_vvi_116	10	129	0.000983528
Vitis vinifera	chr9	18	CH_vvi_8	19	21	5.00601e-35
Vitis vinifera	chr9	19	CH_vvi_5	7	17	0.0000000317655
Zea mays	2	17	CH_zma_158	5	19	0.00017315

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V