PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Chlamydomonas reinhardtii	chromosome_1	17	CH_cre_20	4	5	0.000000329842
Chlamydomonas reinhardtii	chromosome_17	17	CH_cre_29	4	8	0.00000460315
Populus trichocarpa	Chr01	17	CH_ptr_397	3	3	0.000233066
Setaria italica	scaffold_7	17	CH_sit_216	4	6	0.00000257177
Setaria italica	scaffold_9	17	CH_sit_162	4	4	0.00000017185
Solanum lycopersicum	ch09	17	CH_sly_466	3	4	0.0007517
Solanum lycopersicum	ch12	17	CH_sly_381	3	3	0.00018817
Vitis vinifera	chr7	17	CH_vvi_103	6	9	0.0000000000588243
Zea mays	1	17	CH_zma_69	4	4	0.000000190549

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V